Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00312 CTTGTTTCTTCTGCTCTGAACTTGTCCCCCATCGCCGGAGCTTCTTCGTCTTCGGTGTCGCCCTCTGTTTCGCTTGAAGAAGCTCCTCTGTTCGGCTCCAATGGCGGCCACTGTTCATTTCTTATTGGCTTTCTTAAATCTTCTGCTGTTGGTGGGTTTTCGAGGAGCTTTACTTTTGTGAACAAATGTGAGTTCACGGTCTGGCCGGGGATTCTGTCGAACGGCGGCGTTCCGCCACTTCCCACCACTGGATTCACTCTCCAGACTGGGGAATCCAAGACGCTGCCGGCACCGGCGTCTTGGGGAGGGCGTTTCTGGGGGCGAACACTCTGCTCTGATGATTCCACGGGGAAATTCTCCTGCGCCACCGGCGATTGTGGTTCTAACAAACTCGAGTGCGCCGGAAATGGAGCGACGCCGCCGGCGACTCTGGCGGAGTTTACTCTCGATGGCTCCGGCGGACTTGATTTCTTTGACGTTAGTCTCGTGGATGGTTATAATCTTCCGATGATAGTGGTACCACAGGGCGGCTCCGGCGATAACTGTACAAGCACAGGCTGCGTGGTGGATCTAAATGGCGCGTGCCCATCAGAGCTTCGTGTGACGAGCGCCGACGGAAGGGAGGGTGTCGCGTGTAAAAGCGCGTGTGATGCGTTTAACAAACCGCAGTATTGTTGCACGGGCGCGTACCAAACACCAGACACTTGCCAGCCGTCGATGTATTCTCAGATCTTCAAGAGTGCGTGCCCACGCGCTTACAGCTACGCGTATGACGACAAGACGAGCACCTTCACATGCGCCAGTGCTGATTACGTCATCACCTTCTGTCCATCTCCAAACACAAGCTGCCACAAGGCCATACTAGAGGGCCAAAAGTCATCGGAGGCGCAGAACTCACCGGCAACGGCGAACCCATCCTCCGGCGGGGATGGTGCGATGGTTTACGAAGGCGCATCCCTGATACAAATCAACGCAGCGCCGCCGCACGTAGCCGGGATTTCAGCGGTCAGTGCGGTGGCGACTTGGTGGTTGTTGCAGCAGCTGTTCCTCTACTTCTGA 1059 56.19 LVSSALNLSPIAGASSSSVSPSVSLEEAPLFGSNGGHCSFLIGFLKSSAVGGFSRSFTFVNKCEFTVWPGILSNGGVPPLPTTGFTLQTGESKTLPAPASWGGRFWGRTLCSDDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNKPQYCCTGAYQTPDTCQPSMYSQIFKSACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSCHKAILEGQKSSEAQNSPATANPSSGGDGAMVYEGASLIQINAAPPHVAGISAVSAVATWWLLQQLFLYF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1353680 1355752 + CmaCh05G003120.1 Cma05g00312 294430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00312 352 CDD TLP-PA 56 276 - -
Cma05g00312 352 PANTHER OS03G0233200 PROTEIN 49 303 IPR001938 -
Cma05g00312 352 MobiDBLite consensus disorder prediction 1 20 - -
Cma05g00312 352 SMART tha2 57 277 IPR001938 -
Cma05g00312 352 Pfam Thaumatin family 61 277 IPR001938 -
Cma05g00312 352 Gene3D Thaumatin 56 277 IPR037176 -
Cma05g00312 352 ProSiteProfiles Thaumatin family profile. 54 277 IPR001938 -
Cma05g00312 352 PRINTS Pathogenesis-related protein signature 104 115 IPR001938 -
Cma05g00312 352 PRINTS Pathogenesis-related protein signature 267 276 IPR001938 -
Cma05g00312 352 PRINTS Pathogenesis-related protein signature 156 172 IPR001938 -
Cma05g00312 352 PRINTS Pathogenesis-related protein signature 56 68 IPR001938 -
Cma05g00312 352 PANTHER BNAA02G17480D PROTEIN 49 303 - -
Cma05g00312 352 SUPERFAMILY Osmotin, thaumatin-like protein 56 278 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01018 Cma05g00312 CCT
Cma01g01018 Cma05g00312 ECH
Cma05g00312 Cma12g00404 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01627 Cma-Chr4:8200999 Cma05g00312 Cma-Chr5:1353680 2.70E-87 dispersed
Cma05g00312 Cma-Chr5:1353680 Cma12g00404 Cma-Chr12:2094081 0 dispersed
Cma05g00312 Cma-Chr5:1353680 Cma05g00313 Cma-Chr5:1359232 2.16E-95 tandem
Cma01g01978 Cma-Chr1:12735370 Cma05g00312 Cma-Chr5:1353680 8.21E-136 wgd
Cma12g00403 Cma-Chr12:2089523 Cma05g00312 Cma-Chr5:1353680 5.14E-88 wgd
Cma20g00763 Cma-Chr20:3600503 Cma05g00312 Cma-Chr5:1353680 3.75E-99 wgd
Cma03g00680 Cma-Chr3:5628886 Cma05g00312 Cma-Chr5:1353680 1.37E-102 wgd
Cma05g00312 Cma-Chr5:1353680 Cma07g00422 Cma-Chr7:1812385 1.86E-99 wgd
Cma05g00312 Cma-Chr5:1353680 Cma09g00098 Cma-Chr9:437138 9.40E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00312 - - csv:101204094 570.852