Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00313 ATGGGATTTCTTCGAACCCATTTTCTCTCTCCTCCATTTTTGTTTCTCTCTCTGCTTTTGATCGTCTTCTTTAAAGGCGTCTATGGAGGTGGAATTACATTAATAAATAGATGCGATTACACAATTTGGCCGGGAATTCTCGGAAACACCCAATTGGAATCCACTGGCTTCGAGCTCTCCCCTGGGGCGACGCGTGCATTCCAACCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGTCGGACAGGCTGTTCGTTCGACTCCGCCACCGGTCAAGGCAGCTGCCAGACAGCCGACTGTGGGTCAAACCAAATGGAATGTAATGGCAACGGAGCCACCCCACCCGCGACTCTAGCTGAGTTCACGATTGGTTCCGGTGGTGGCGCGATGGACTTTTACGATGTCAGTTTGGTCGACGGCTACAACATTCCGATGATGGTGGACTCCACTGGCGGGAGCGGCGCTTGTCAGTCGACTGGGTGTGCGGCAGACCTGAACCGACGGTGCCCTGCTGAGCTACGTGGTGGCGAGGGGAAAGCGTGCAGGAGCGCATGTGAGGCGTTTGGGAATCCGGAGTACTGTTGTAGCGGCGCGTATAACTCACCCGCCGCCTGTAAACCGTCGTTGTACTCGGAAATGTTTAAATCGGCTTGTCCCAAATCGTATAGCTACGCCTTTGATGACGCGTCAAGCACTTTTACTTGCAGTGGTGCAGATTACACCATCACATTCTGCCCTTCATCAGCAAGCCAAAAATCAGAAAAAGACCCGTCGAACGGAGGCGATGGTCCGTCGGTGACGTTCAACAGTTCATGGCTGCCGGACTTCATCACCGGAGAAGGATCATCCAAAACAATGGCTTTGTCTTCAGCTTTGAATTGGACACTGCAGAATGTTTCTACATTAACAATTTCTTGA 915 52.57 MGFLRTHFLSPPFLFLSLLLIVFFKGVYGGGITLINRCDYTIWPGILGNTQLESTGFELSPGATRAFQPPPGWSGRFWGRTGCSFDSATGQGSCQTADCGSNQMECNGNGATPPATLAEFTIGSGGGAMDFYDVSLVDGYNIPMMVDSTGGSGACQSTGCAADLNRRCPAELRGGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSLYSEMFKSACPKSYSYAFDDASSTFTCSGADYTITFCPSSASQKSEKDPSNGGDGPSVTFNSSWLPDFITGEGSSKTMALSSALNWTLQNVSTLTIS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1359232 1361013 + CmaCh05G003130.1 Cma05g00313 294431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00313 304 PANTHER OS03G0233200 PROTEIN 20 262 IPR001938 -
Cma05g00313 304 SUPERFAMILY Osmotin, thaumatin-like protein 32 246 IPR037176 -
Cma05g00313 304 ProSiteProfiles Thaumatin family profile. 32 245 IPR001938 -
Cma05g00313 304 Pfam Thaumatin family 36 245 IPR001938 -
Cma05g00313 304 Gene3D Thaumatin 31 245 IPR037176 -
Cma05g00313 304 SMART tha2 32 245 IPR001938 -
Cma05g00313 304 CDD TLP-PA 32 244 - -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Cma05g00313 304 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 20 262 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00313 Cma09g00098 CCT
Cma05g00313 Cma09g00098 ECH
Cma05g00313 Cma12g00403 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00313 Cma-Chr5:1359232 Cma12g00403 Cma-Chr12:2089523 9.46E-159 dispersed
Cma05g00312 Cma-Chr5:1353680 Cma05g00313 Cma-Chr5:1359232 2.16E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00313 - - csv:101204331 530.02