Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00489 ATGAGGCTGGACCCACAACGTAGAAACCGACACCTGCCAGTGAACTCGAAGGACACGTGTCAAGAAGTAATTTTGGGGCCGGACTCTTATAAAACCCAAGGGTTGCCTGAGATCGTGAATCAGAGTGAGACCGAGCGAAATTCGAGAGAAATTTCACTGACTGTGTTCTTGTTTTCGATCTTCTTCTTCTTCAATCCCCCCTCTAATGATCCGAAAGCAAACTTGAGAAAAAAGGTTTGTCGAAAGCGCAGAGAAGTTATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGATTTTCAGTCAGATCCAGTTGGTGGTGAATTAATGGAAGCGCTTGAGCCTTTTATGAAAGCTGCTTCCTCTTCATTTTCTATTCCCGATTTCTCTTTTTCATCTTCGATCCAAACAGAATCCACTTCTTACTCCTCCGATTGTTCTCCTCCGATGATCCATTTGTTTTCCAGTCAAGACTTCCATGGATTAGAGCAATCAGCCTCCATCGGACTTAATTACTTGACGCCCTTTCAGATCCAACAGATTCAATCTCAGTTTGCTCTCCAGACACTGATCCCGCCAGTTTGGGGACAGATTAACAACCAGGTAGTGAGAAATCAGAGGAACGGCGGGAATTTGTTAGCACCGAAGGGGATTTCCATGAAGCAAGTTGGATCTCCACCGAAATCGACGAAGCTTTATCGAGGCGTAAGGCAAAGGCATTGGGGAAAATGGGTGGCCGAGATCCGTCTACCGAGGAACCGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCCTACGATAAAGCCGCTTACAAGCTTCGAGGCGACTTTGCTAGGCTCAATTTCCCTCATCTCAAGCACCATGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTTCACTCCGCCGTCGACGCGAAGCTTGAAGCCATCTGCCAAACCTTGGCGGAGTCGCAGAAACAGGGGAAATCAAACCGAGCCTCATCGAAGAAATCGAAATCATCGAGTTCTTCAACAGTCGAATCAGAGTGTGAGACGCCGACGGTGATTGATCCCGACGAGAATCTGAGAACAGAGGATGCCAGATCGAGTGGATCGGAGATCTGTTGCAAGGTGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAACGACGAGTCGGCAGGGTCTTCGCCTTTGTCGGATCTGACATTCCCCGATCCGACGGATTCACCGTGGGAACCGCCGTCGGAAAGCAGTATGCTGCAGAAATATCCGTCGGAAATCGATTGGGCTTCGATCTTCACATCTTGA 1311 49.73 MRLDPQRRNRHLPVNSKDTCQEVILGPDSYKTQGLPEIVNQSETERNSREISLTVFLFSIFFFFNPPSNDPKANLRKKVCRKRREVMAALMDLYGCRDFQSDPVGGELMEALEPFMKAASSSFSIPDFSFSSSIQTESTSYSSDCSPPMIHLFSSQDFHGLEQSASIGLNYLTPFQIQQIQSQFALQTLIPPVWGQINNQVVRNQRNGGNLLAPKGISMKQVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSNRASSKKSKSSSSSTVESECETPTVIDPDENLRTEDARSSGSEICCKVENSSSPVSAENDESAGSSPLSDLTFPDPTDSPWEPPSESSMLQKYPSEIDWASIFTS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2317976 2319770 + CmaCh05G004890.1 Cma05g00489 294607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00489 436 MobiDBLite consensus disorder prediction 375 404 - -
Cma05g00489 436 CDD AP2 230 290 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 MobiDBLite consensus disorder prediction 357 373 - -
Cma05g00489 436 Pfam AP2 domain 232 280 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 ProSiteProfiles AP2/ERF domain profile. 231 288 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 PRINTS Ethylene responsive element binding protein signature 254 270 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 SMART rav1_2 231 294 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 MobiDBLite consensus disorder prediction 324 424 - -
Cma05g00489 436 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 90 433 - -
Cma05g00489 436 MobiDBLite consensus disorder prediction 324 352 - -
Cma05g00489 436 SUPERFAMILY DNA-binding domain 231 289 IPR016177 GO:0003677
Cma05g00489 436 Gene3D AP2/ERF domain 231 289 IPR036955 GO:0003700|GO:0006355
Cma05g00489 436 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 90 433 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00489 Cma12g00148 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01414 Cma-Chr1:9979547 Cma05g00489 Cma-Chr5:2317976 1.12E-98 dispersed
Cma05g00489 Cma-Chr5:2317976 Cma09g00654 Cma-Chr9:3113076 9.13E-104 dispersed
Cma15g01277 Cma-Chr15:8091619 Cma05g00489 Cma-Chr5:2317976 1.82E-34 dispersed
Cma07g00534 Cma-Chr7:2311762 Cma05g00489 Cma-Chr5:2317976 1.93E-80 transposed
Cma08g01023 Cma-Chr8:6400594 Cma05g00489 Cma-Chr5:2317976 6.24E-33 transposed
Cma12g00148 Cma-Chr12:648339 Cma05g00489 Cma-Chr5:2317976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35059 PF00847 AP2 6.30E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00489 K09286 - csv:101222833 518.079