Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01264 ATGGAACGACCAAGAGTTGTTACGGATGTCCGAATTACTGCAGATCATGGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTGTGAGGGATCGAGCTGCTTTAAGAAGGTTGTCGGATGTGAGTGATGGAGATCAACAACAGCAGCCGCAAAAGAGAACAGGTCTTGCTTTAAATCCGAGCAGCCAACTCGTATATGAGGATCTCAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTATCATCAATGCCCGCGAATGCTTATGCAGCTGAAAGGGATAACAAGGTTTATCCTAACAACACAAGCAAATATCAGTGGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGTTCAATTTGACCCCTCAACACTGGCCTTGCATGCAATGGAATCACCTCATTCATGTTATCCTTGTGGGGCTGGATTGGGAGATTTCCCTGTCACTGGCAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATTATATCCATTAGGAAAAACATCTCGTGTGAACAACTTATCAGAAAGACATACGCTGTCTGTAAGTATGTCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTCGATTCACTTATCTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATCATGAGCTGGAAAGCGCAGGGAGTTCTCAAAGACTCAGAATAATTCTTGTTTCTACAAATGATTGTTGTGAGAGTCCTACTTCTATTGAAGGAAGGGTGGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTAAATGGTATGCTAGACCCAAGTCTTCAAAGGAGCTCTAGTGGACAGAGTTTCACAAGCCAGACTAGCCAGGTGGGAACCATCTCAGATCCTAGTCCCAATTTTTGCACTGTTTCTTCACATGCTACAGACTTAAAAGATGCCAATTCACCTATACCAAATTTGGCAGGAATGTTTCCTAGACCTGGTGGTCAATTGTTAATACCCATTCAAACCCCACGCAAGTCACTTAATCAAACACCTATATTTTCTCCGGTTACAGTAATCCAAAAAGATTTTAAGAACGTGGATCCAACATACGCAGAAGATGCTAGAAACTTCACTCCATTTGTTGCAGAAAAACGTCCATGTGATACGGTTTATTATGTTGATGCAATGGGCCGTCACAATAACCTTTACCATGGTTCTCCGCTGATGAATTATCATCATGACAAATCTACAGTGGAAGCTGATGAGAAATACAAAGCTCATGATGTTCATTTCCCACAAAGCTCCAGCGAACATTTTGTGCCTGCAACTTACTGGGATCAAAGTGATACACATTCAATCAAAACTCTGCTCAAGGAACGGGCAGTTAATTATGAACAGCTGTACTTGGATGCCGAATATTTGATGCAGTTAAGATCTGGAACCACCCACATGAGACAAACAATGATGCATTCACATTCTGAGCCCCTACTAAAGGAACAGGATCAAAAGTTGAAACATGGAGGAGCCTATCCACTGAACTCATTCAATGATAGTGATCAATTATATTCAATGGCAATATCAAGTTCCTTTCAGGATTTCCAAACGATATGGAAACAGAGAGTTGGCGGGGAATTTCAAGATGCCAAGTATGAGAAACATGGAACGTTGGCGTCTGGTAGTGAGAATGAAGGATATGAAGAATGCAATTTTGATGAAAAAAAGGTTAATTTCAATGGAAGGATTTATGTCCCATCACTTAATGGTGATGAAAAATACAAATACTTGCAACATGTTGACTACCAACAAAATGGTTACCCCCCGCTAGAGGCACGAAGCCTTGGAGGCAGAACTTCTGCAGAACGAGGGTTTGAATTAGAAAAATCTACAGATGTCGTGGATGGCCCCTCCCTCATTTACCATTTAGAAACAACTGTTCCAAAAGTTTTCGAGGAGAGACAATATTCTGTCGAGGATCAACGAACCACTTCTGATATAGTAAGGAGCCAACCATTTTCTTGCGCATCTTCTGATCTACTACCTCTTACAACTCAAGCTTTGTGCGACAGAAAGATCATAAATCAGGAACCAACATGGGATAGTTCTGCTTTAGGTAGAGATGTTTCTCTAAGCGATGAGAACTTCGTAACCTGTAATTACCGTAAGGTTGCCGACCATAGTAGAAAAAAGAGCAACCTTGATGATTCTCTATTTATCAAATCATCAAATTCAGATGATTTTCATAGCAATGAGGACGTGGGATTAGCTGTAATAGTTGAAGATGTAACTCATAGTATACCTCCCGACATACCCTTAGCTTCTGGAGTTATCCCACGGGTTGAAAATGAGGCCAGTGATGACTCTCCATCTTCAAGAGGACATGATGCTCATATTCCTAGTACGGAAACTGACCATGAGGATGCAGACAGTATTCTTAGTTCTAGGGATGAATCAATGAGCGAGGCAGCAATAGCTGAAATTGAAGCCGGCATCTATGGCCTGCAGATCATAAAGAATGAAGATCTCGAGGAACTGCAAGAATTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACGGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGAAGTTTTTCTGAGCAAGAAAGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCGAACGTGTTGGCTTTTTATGGAGTGGTTCCTGATGGACCTGATGGAACGTTGGCAACTGTAACGGAGTATATGGTAAACGGGTCATTAAGGCATGTTCTTTTAAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATGATTGCAATGGATGCAGCTTTTGGCATGGAATATTTGCATTTGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCCATATGCAAGGTTGGAGATTTTGGGTTGTCGAGAATTAAGCGCAACACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTGGCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACTGGCGAGGAGCCATATGCCAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACTCTTAGACCACCGATCCCAAAACGTTGCGATACCGAATGGAAAAAGCTAATGGAAGATTGTTGGTCACCTGAACCTGCAGCGAGGCCATCGTTCACCGAGATAACGAATAGACTTCGCAGCATGTCGATAGCGCTCCAGATCAGAAAGAGGCCAAATGTAGGTAGTAGATGA 3456 41.84 MERPRVVTDVRITADHGVSDVCVQTGEVFSPQFVRDRAALRRLSDVSDGDQQQQPQKRTGLALNPSSQLVYEDLSGILGLKRMNSESSSELSSMPANAYAAERDNKVYPNNTSKYQWEYSATGQASGAYADEINRGVQFDPSTLALHAMESPHSCYPCGAGLGDFPVTGKMKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNISCEQLIRKTYAVCKYVHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELESAGSSQRLRIILVSTNDCCESPTSIEGRVVQPIDVDYQYVAAVNGMLDPSLQRSSSGQSFTSQTSQVGTISDPSPNFCTVSSHATDLKDANSPIPNLAGMFPRPGGQLLIPIQTPRKSLNQTPIFSPVTVIQKDFKNVDPTYAEDARNFTPFVAEKRPCDTVYYVDAMGRHNNLYHGSPLMNYHHDKSTVEADEKYKAHDVHFPQSSSEHFVPATYWDQSDTHSIKTLLKERAVNYEQLYLDAEYLMQLRSGTTHMRQTMMHSHSEPLLKEQDQKLKHGGAYPLNSFNDSDQLYSMAISSSFQDFQTIWKQRVGGEFQDAKYEKHGTLASGSENEGYEECNFDEKKVNFNGRIYVPSLNGDEKYKYLQHVDYQQNGYPPLEARSLGGRTSAERGFELEKSTDVVDGPSLIYHLETTVPKVFEERQYSVEDQRTTSDIVRSQPFSCASSDLLPLTTQALCDRKIINQEPTWDSSALGRDVSLSDENFVTCNYRKVADHSRKKSNLDDSLFIKSSNSDDFHSNEDVGLAVIVEDVTHSIPPDIPLASGVIPRVENEASDDSPSSRGHDAHIPSTETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKNEDLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSGSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDTEWKKLMEDCWSPEPAARPSFTEITNRLRSMSIALQIRKRPNVGSR 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8399165 8405456 - CmaCh06G012640.1 Cma06g01264 296818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01264 1151 ProSitePatterns Protein kinases ATP-binding region signature. 876 901 IPR017441 GO:0005524
Cma06g01264 1151 Gene3D - 189 273 - -
Cma06g01264 1151 ProSiteProfiles Protein kinase domain profile. 870 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01264 1151 SMART PB1_new 185 272 IPR000270 GO:0005515
Cma06g01264 1151 MobiDBLite consensus disorder prediction 813 842 - -
Cma06g01264 1151 Pfam Protein tyrosine and serine/threonine kinase 872 1133 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 Pfam PB1 domain 186 271 IPR000270 GO:0005515
Cma06g01264 1151 MobiDBLite consensus disorder prediction 46 65 - -
Cma06g01264 1151 MobiDBLite consensus disorder prediction 44 65 - -
Cma06g01264 1151 SMART serkin_6 870 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01264 1151 CDD STKc_MAP3K-like 876 1133 - -
Cma06g01264 1151 SUPERFAMILY CAD & PB1 domains 186 274 - -
Cma06g01264 1151 SUPERFAMILY Protein kinase-like (PK-like) 859 1132 IPR011009 -
Cma06g01264 1151 MobiDBLite consensus disorder prediction 798 843 - -
Cma06g01264 1151 Gene3D Transferase(Phosphotransferase) domain 1 958 1147 - -
Cma06g01264 1151 MobiDBLite consensus disorder prediction 310 329 - -
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 989 1007 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 1060 1082 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 1104 1126 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PRINTS Tyrosine kinase catalytic domain signature 952 965 IPR001245 GO:0004672|GO:0006468
Cma06g01264 1151 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 81 1145 - -
Cma06g01264 1151 Gene3D Phosphorylase Kinase; domain 1 863 957 - -
Cma06g01264 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Cma06g01264 1151 CDD PB1_UP2 174 269 - -
Cma06g01264 1151 PANTHER SERINE-THREONINE PROTEIN KINASE 81 1145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01264 Cma14g01874 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00673 Cma-Chr5:3463747 Cma06g01264 Cma-Chr6:8399165 8.13E-25 dispersed
Cma06g01264 Cma-Chr6:8399165 Cma13g00852 Cma-Chr13:7026725 2.80E-37 dispersed
Cma14g01874 Cma-Chr14:13282083 Cma06g01264 Cma-Chr6:8399165 1.56E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68655 PF07714 PK_Tyr_Ser-Thr 7.30E-62 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01264 - - cmax:111473634 2297.32