Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01333 ATGGATCCATTGGAGGACCCGAGCTGTTCGGATTTTCTTGATTACTCCTTGTTCGCCGACGCCGACAACACTGTTAGCCCTTCGCTCGGTCCTCTATGGCTGCCTAATGATTTCAGGGATGGTGGTGCGGATACGGGTGTTTCAGACGGGCGTGTTGAATCTGAAGAAACCGATTGTTTGCGGAAGAGGGTGCGAGATGAGCCGTGCACTGGACCAACTTCTAAAGCTTGTCGCGAGAGGTTGCGGAGAGGGAGATTAAATGATAGGTTTCTAGATTTGAGCCATGCTTTAGAACCTGATAGACCTGCCAAAACTAACAAGCCTGCCATACTTGATGATGCCATTAGAGTGTTGAATCAACTCAAGACTGAAGCTGAAGAGCTCAAACAAACTAACGAAAAGCTACGGGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAGGAGAAAACAATTTTGAAGGAAGACAAAGAAAGAATCGAGCAACAGTTGAAATCTATAGCCATTCCACCTCCAGGGCTTATCCCAGGTCATCCTGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATACCAATGTGGCCATATCTTCCTCCATCAGTATGTGATACATCTCAAGATCATGAGCTCAGGCCTCCTGCTGCTTAG 678 46.76 MDPLEDPSCSDFLDYSLFADADNTVSPSLGPLWLPNDFRDGGADTGVSDGRVESEETDCLRKRVRDEPCTGPTSKACRERLRRGRLNDRFLDLSHALEPDRPAKTNKPAILDDAIRVLNQLKTEAEELKQTNEKLREEVECLKAEKNDLRKEKTILKEDKERIEQQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWPYLPPSVCDTSQDHELRPPAA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8764055 8766359 + CmaCh06G013330.1 Cma06g01333 296887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01333 225 Gene3D - 73 149 IPR036638 GO:0046983
Cma06g01333 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 141 IPR036638 GO:0046983
Cma06g01333 225 Coils Coil 111 166 - -
Cma06g01333 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Cma06g01333 225 SMART finulus 76 127 IPR011598 GO:0046983
Cma06g01333 225 PANTHER TRANSCRIPTION FACTOR BHLH104 1 225 - -
Cma06g01333 225 PANTHER BHLH TRANSCRIPTION FACTOR 1 225 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma06g01333 225 CDD bHLH_AtILR3_like 75 150 - -
Cma06g01333 225 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01333 Cma14g01806 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01333 Cma-Chr6:8764055 Cma16g00846 Cma-Chr16:4970716 9.38E-53 dispersed
Cma14g01806 Cma-Chr14:12966023 Cma06g01333 Cma-Chr6:8764055 5.66E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35264 PF00010 HLH 2.40E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01333 - - csv:101210812 340.117