Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01483 ATGAAAACACAAAGCGCTTCTAGAGAGAGAAAACAGGAAGAAGAAGCTCAAACAGAGATACTACGATCCCCATGTGATCGGAACCTCCATTCTTCCAGCAACAATTCAATATTCTGTTCTTCACTCATTACTGCGCAATCAGTCACTAATCCATCACTTTTCAGTCATTCAACCAGCGGAGGCCGTACGATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCTGAATGGACTGCGTCGGGACCTGATACAGGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCCGAAAGGCCTGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTTTGTGCCAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCCTGTGTCTTTGAATTTCTATGGCTATCCACTTCGGCAGGGGGAAAAGGAATGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCTGGTTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTGCACCACTGCCAGCTCCAATGCCTCCTGCACCGTCTGTTTACCCGCCCGTGCAGTCTCCATCTGCACATTCGTCACAACAGTATGGAGTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCCAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGGTTGTACAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTGCCTATGCTGGATCTTACCAGCCAATGCCATCTGCTGGTGCGTCAAGTACTAGCCAGAAGGAGCACTCGTTTCCAGAAAGACCTGGGCAGCCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGCTAATTCGAGATCAAGTGTTGTTCTTAGCCAAATAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGCTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCTTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATTTTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGACCCAGAATGGATTCTAACCCTTCAAGAATGTCTTCATCAACGAGCACCTCTAGTGGATTGGCTGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAATGTTCAACGATCTTCTCAAAGTTCAGGCCTGTCAGCGAGCAGTACCTCCAGCCCCACCAGTGTGGAGGGACAAGTGACCCCATTTGCAAAAGTCAAGGACAACAGGCCTACACATGCCAACAAAAAGCTTCAATCAGTCGAACCCCCAAAGCCAAGCAGCAAAATAGACCATACAAATGACAAATAA 1794 48.83 MKTQSASRERKQEEEAQTEILRSPCDRNLHSSSNNSIFCSSLITAQSVTNPSLFSHSTSGGRTMKPYGQSMEGSQSDPSPEWTASGPDTGHGEPVWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRPGGRDYPERVGQPLCQECANLVLPVSITILSRKWVLSAGMCKFGASCKYHHPQQEMGSLSPVSLNFYGYPLRQGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVAPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPSPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPAYAGSYQPMPSAGASSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELANSRSSVVLSQIGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSFSSSELRPEHFSGPRMDSNPSRMSSSTSTSSGLAGSTTSRTEMHSHSNVQRSSQSSGLSASSTSSPTSVEGQVTPFAKVKDNRPTHANKKLQSVEPPKPSSKIDHTNDK 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9429815 9436573 - CmaCh06G014830.1 Cma06g01483 297037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01483 597 Gene3D - 381 469 - -
Cma06g01483 597 Gene3D - 173 251 - -
Cma06g01483 597 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 73 543 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Cma06g01483 597 PANTHER PROTEIN PHOSPHATASE RELATED 73 543 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 109 137 IPR000571 GO:0046872
Cma06g01483 597 MobiDBLite consensus disorder prediction 505 560 - -
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 220 246 IPR036855 GO:0046872
Cma06g01483 597 Pfam RNA-binding, Nab2-type zinc finger 185 198 - -
Cma06g01483 597 SMART c3hfinal6 109 136 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 429 456 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 177 199 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 383 410 IPR000571 GO:0046872
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 387 410 IPR036855 GO:0046872
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 433 460 IPR036855 GO:0046872
Cma06g01483 597 MobiDBLite consensus disorder prediction 51 107 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 429 457 IPR000571 GO:0046872
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 383 411 IPR000571 GO:0046872
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 111 137 IPR036855 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 410 IPR000571 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 136 IPR000571 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 456 IPR000571 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872
Cma06g01483 597 MobiDBLite consensus disorder prediction 1 31 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 1 21 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 365 380 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 51 83 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 489 597 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Cma06g01483 597 Gene3D - 100 167 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 360 386 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01483 Cma14g01634 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01483 Cma-Chr6:9429815 Cma10g00830 Cma-Chr10:3873704 4.64E-86 dispersed
Cma14g01634 Cma-Chr14:12230592 Cma06g01483 Cma-Chr6:9429815 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35278 PF00642 zf-CCCH 1.70E-07 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01483 - - mcha:111009281 788.104