Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01571 | ATGGAGAAAAAATTTGAAGACTCGTTGATGGGGTCGGCAACTTCTACCGGAATTTACTCTCAAACGGTGTTTTCCGACGAGTTTCCGGTGGGTGGTTCGGGTTTTTCCGGTGTGTTCGACCTGCCATGTGATGATCATAAAGCTTCTTGTTGTTCTTCTTCTTCTTTTGACTTGTTTGGTGGTGGGATTGGATTCCATGATTTCTATAATCCTTCTTCTATATTCGATTTGCTTTCTACTACCGTGCCGCCCCTTCAGCCGCCGCTTTCCTCGCCGTCCTCCACCGTCCCGGAGTCCTCCGAGGTGCTTAATGCTCCGCCGACGCCTAATTCTTCCTCCGTTTCTAATTCCTCCTCCAATGAAGCTGCTCCTATCGAAGAGGTTGACAAGAACGCCAAGACTTCCAAAGTGTTGAAGCCAAAGAAGAACCAGAAGAAGCAACGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGACGGTTACCGGTGGCGGAAGTACGGTCAAAAGACAGTGAAGAACAGTCCTTATCCTAGAAGTTATTATCGTTGCACGACATCACAATGCGGTGTGAAAAAGAGGGTGGAACGGTCATCGAGCGACCATTCAATCGTCATCACAACGTACGAAGGCCAACACACCCACCAAAGTCCGGTAATGCCACGAGGAAGCATCCGAATACTATCGGAATCCACCAACTGCCTCGTTGCCGATCACGACGTTGCCACCACCGGAATTCTATTCCAACACAACATTCCCGGCCAACCCTTCATGTATAACCCTCCGCAACCGTTTCTAACAAACGAATCGTCGTTCTTGAGTCCTCGTCCTCCTCCGCCTTCCCTTTCACCGCCATTGTTGTCGTCTCGAGCTTCCTTGCTTCAAGACAATGGGCTTCTGCAGGACTTGGTGCCATTGCAAGTGAGGAAGGAACCAAAAGATGAACAAAATGGATGA | 972 | 48.87 | MEKKFEDSLMGSATSTGIYSQTVFSDEFPVGGSGFSGVFDLPCDDHKASCCSSSSFDLFGGGIGFHDFYNPSSIFDLLSTTVPPLQPPLSSPSSTVPESSEVLNAPPTPNSSSVSNSSSNEAAPIEEVDKNAKTSKVLKPKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKTVKNSPYPRSYYRCTTSQCGVKKRVERSSSDHSIVITTYEGQHTHQSPVMPRGSIRILSESTNCLVADHDVATTGILFQHNIPGQPFMYNPPQPFLTNESSFLSPRPPPPSLSPPLLSSRASLLQDNGLLQDLVPLQVRKEPKDEQNG | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9833175 | 9834847 | + | CmaCh06G015710.1 | Cma06g01571 | 297125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01571 | 323 | MobiDBLite | consensus disorder prediction | 92 | 124 | - | - | |
Cma06g01571 | 323 | Gene3D | WRKY domain | 148 | 224 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01571 | 323 | SMART | WRKY_cls | 163 | 222 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01571 | 323 | MobiDBLite | consensus disorder prediction | 273 | 293 | - | - | |
Cma06g01571 | 323 | Pfam | WRKY DNA -binding domain | 164 | 221 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01571 | 323 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 87 | 309 | IPR044810 | GO:0003700 | |
Cma06g01571 | 323 | SUPERFAMILY | WRKY DNA-binding domain | 155 | 223 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01571 | 323 | ProSiteProfiles | WRKY domain profile. | 158 | 223 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g01571 | 323 | MobiDBLite | consensus disorder prediction | 86 | 153 | - | - | |
Cma06g01571 | 323 | PANTHER | WRKY TRANSCRIPTION FACTOR 48-RELATED | 87 | 309 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01571 | Cma17g00379 | CCT | |
Cma06g01571 | Cma17g00379 | ECH | |
Cma06g01571 | Cma14g01581 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01571 | Cma-Chr6:9833175 | Cma20g00797 | Cma-Chr20:3733279 | 8.39E-53 | dispersed | |
Cma14g01581 | Cma-Chr14:11876011 | Cma06g01571 | Cma-Chr6:9833175 | 5.42E-130 | wgd | |
Cma17g00379 | Cma-Chr17:2109793 | Cma06g01571 | Cma-Chr6:9833175 | 2.42E-59 | wgd | |
Cma06g01571 | Cma-Chr6:9833175 | Cma08g01289 | Cma-Chr8:7800804 | 2.92E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35286 | PF03106 | WRKY | 1.50E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01571 | - | - | bhj:120088001 | 367.466 |