Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01571 ATGGAGAAAAAATTTGAAGACTCGTTGATGGGGTCGGCAACTTCTACCGGAATTTACTCTCAAACGGTGTTTTCCGACGAGTTTCCGGTGGGTGGTTCGGGTTTTTCCGGTGTGTTCGACCTGCCATGTGATGATCATAAAGCTTCTTGTTGTTCTTCTTCTTCTTTTGACTTGTTTGGTGGTGGGATTGGATTCCATGATTTCTATAATCCTTCTTCTATATTCGATTTGCTTTCTACTACCGTGCCGCCCCTTCAGCCGCCGCTTTCCTCGCCGTCCTCCACCGTCCCGGAGTCCTCCGAGGTGCTTAATGCTCCGCCGACGCCTAATTCTTCCTCCGTTTCTAATTCCTCCTCCAATGAAGCTGCTCCTATCGAAGAGGTTGACAAGAACGCCAAGACTTCCAAAGTGTTGAAGCCAAAGAAGAACCAGAAGAAGCAACGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGACGGTTACCGGTGGCGGAAGTACGGTCAAAAGACAGTGAAGAACAGTCCTTATCCTAGAAGTTATTATCGTTGCACGACATCACAATGCGGTGTGAAAAAGAGGGTGGAACGGTCATCGAGCGACCATTCAATCGTCATCACAACGTACGAAGGCCAACACACCCACCAAAGTCCGGTAATGCCACGAGGAAGCATCCGAATACTATCGGAATCCACCAACTGCCTCGTTGCCGATCACGACGTTGCCACCACCGGAATTCTATTCCAACACAACATTCCCGGCCAACCCTTCATGTATAACCCTCCGCAACCGTTTCTAACAAACGAATCGTCGTTCTTGAGTCCTCGTCCTCCTCCGCCTTCCCTTTCACCGCCATTGTTGTCGTCTCGAGCTTCCTTGCTTCAAGACAATGGGCTTCTGCAGGACTTGGTGCCATTGCAAGTGAGGAAGGAACCAAAAGATGAACAAAATGGATGA 972 48.87 MEKKFEDSLMGSATSTGIYSQTVFSDEFPVGGSGFSGVFDLPCDDHKASCCSSSSFDLFGGGIGFHDFYNPSSIFDLLSTTVPPLQPPLSSPSSTVPESSEVLNAPPTPNSSSVSNSSSNEAAPIEEVDKNAKTSKVLKPKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKTVKNSPYPRSYYRCTTSQCGVKKRVERSSSDHSIVITTYEGQHTHQSPVMPRGSIRILSESTNCLVADHDVATTGILFQHNIPGQPFMYNPPQPFLTNESSFLSPRPPPPSLSPPLLSSRASLLQDNGLLQDLVPLQVRKEPKDEQNG 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9833175 9834847 + CmaCh06G015710.1 Cma06g01571 297125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01571 323 MobiDBLite consensus disorder prediction 92 124 - -
Cma06g01571 323 Gene3D WRKY domain 148 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g01571 323 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01571 323 MobiDBLite consensus disorder prediction 273 293 - -
Cma06g01571 323 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01571 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 309 IPR044810 GO:0003700
Cma06g01571 323 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g01571 323 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g01571 323 MobiDBLite consensus disorder prediction 86 153 - -
Cma06g01571 323 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 87 309 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01571 Cma17g00379 CCT
Cma06g01571 Cma17g00379 ECH
Cma06g01571 Cma14g01581 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01571 Cma-Chr6:9833175 Cma20g00797 Cma-Chr20:3733279 8.39E-53 dispersed
Cma14g01581 Cma-Chr14:11876011 Cma06g01571 Cma-Chr6:9833175 5.42E-130 wgd
Cma17g00379 Cma-Chr17:2109793 Cma06g01571 Cma-Chr6:9833175 2.42E-59 wgd
Cma06g01571 Cma-Chr6:9833175 Cma08g01289 Cma-Chr8:7800804 2.92E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35286 PF03106 WRKY 1.50E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01571 - - bhj:120088001 367.466