Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00423 ATGGCTTCCTTTTCCATTAAACTTCTCTTCTTTTCATTCCCTTTCTTCTTCCTCTTCCTTTCCCTTACTCACTCTGCAACCATCACTCTCCAAAACAACTGCACTCACAAAATCTGGCCCGGCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACCGGTTTTCCCCTCCTCCCCGGCGCTACTTCTCTCCTCTCTCTCCCCACCGCCTGGTCCGGCCGCATTTGGGCCCGCACTTTCTGCTCCACCGATTCCTCAGGCCGCTTCTCCTGCGCCACTGCCGACTGCGGCTCTGGCCTTGTCGAATGCAACGGCGCCTGCGCCACCCCACCCGCCACTCTCGCTGAGTTCACCCTCAACGGCGGTGGTGGCTTCGATTTCTACGACGTCAGCCTCGTCGACGGCTACAACATTGCGATGCAAATCGTGGCAGAGGGTGGGAAGTCAGGAAACTGTACGGCCACTGGTTGCATTGCGGATTTAAACGGGGATTGCCCAGAGGAGCTGCAGGTGGTTATTGGCGGCGGAGAGGATGGTCGGAACCGGAGCGTGGCGTGCAAAAGCGCGTGTGTGGCGTTCGGGAAAGCGGAATATTGCTGCAGTGGGGCGTTTGCGAATCCGAACACGTGCAAACCCAGTAATTACTCGAAATTCTTTAAGAACAATTGCCCATTGGCTTACAGTTACGCCTTCGACGATGGAACAAGCACCTTCACCTGTATGTCGGCCAATTATGTCGTCACTTTTTGCCCCTCGCCGTTGGCCAGTTTCAAGGCTTCTAGCAAACCACAACCGCAAGCGGCTGACGTTTCAGGCAGCCGACGTCGTGCTGCACCACCGTGTTTAGCTATTCTCACCGCCGTTTGGGTGGCCGTTTGGCGGCTGCGGCATCCGTCTCTACGCCGCAAATAG 915 56.83 MASFSIKLLFFSFPFFFLFLSLTHSATITLQNNCTHKIWPGILSGAGTAPLSTTGFPLLPGATSLLSLPTAWSGRIWARTFCSTDSSGRFSCATADCGSGLVECNGACATPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVAEGGKSGNCTATGCIADLNGDCPEELQVVIGGGEDGRNRSVACKSACVAFGKAEYCCSGAFANPNTCKPSNYSKFFKNNCPLAYSYAFDDGTSTFTCMSANYVVTFCPSPLASFKASSKPQPQAADVSGSRRRAAPPCLAILTAVWVAVWRLRHPSLRRK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1816089 1817784 - CmaCh07G004230.1 Cma07g00423 297738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00423 304 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Cma07g00423 304 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Cma07g00423 304 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Cma07g00423 304 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Cma07g00423 304 SUPERFAMILY Osmotin, thaumatin-like protein 26 253 IPR037176 -
Cma07g00423 304 SMART tha2 28 252 IPR001938 -
Cma07g00423 304 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Cma07g00423 304 CDD TLP-PA 27 251 - -
Cma07g00423 304 Pfam Thaumatin family 32 252 IPR001938 -
Cma07g00423 304 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Cma07g00423 304 PIRSF PR5 1 293 IPR001938 -
Cma07g00423 304 Gene3D Thaumatin 26 252 IPR037176 -
Cma07g00423 304 PANTHER OS03G0233200 PROTEIN 21 266 IPR001938 -
Cma07g00423 304 PANTHER - 21 266 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00423 Cma20g00764 CCT
Cma07g00423 Cma16g01240 CCT
Cma07g00423 Cma20g00764 ECH
Cma07g00423 Cma16g01240 ECH
Cma03g00680 Cma07g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00423 Cma-Chr7:1816089 Cma12g00404 Cma-Chr12:2094081 1.25E-101 dispersed
Cma07g00423 Cma-Chr7:1816089 Cma16g01240 Cma-Chr16:9373372 1.01E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00423 - - cmax:111497364 605.905