Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00485 | ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATACGGAATCTTCAACCAAACTGCCTAATTCTGATCATACACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTACACAAACACACAACAGACCATCCTGTAGCAACAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGTTACTCAGCCGATTGCAAGCAGCAGATCAACCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTCCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACGCCCGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTTGCTGTACCCAGTGGCTTTTTCATCTCCAATACCATCAGAAACAATGGCCATCACACTGATAGGTCACCAGTTCCACTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCTGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA | 975 | 46.87 | MEMRGEDEEIGTPSPLCYQSNTESSTKLPNSDHTHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATTPDPVQTSVTASPSAVTQPIASSRSTSRTPPASNNVIPPVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGHHTDRSPVPLSRHHQLPAVPISSMMAFGGSNGAPDESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2110438 | 2111412 | - | CmaCh07G004850.1 | Cma07g00485 | 297800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00485 | 324 | MobiDBLite | consensus disorder prediction | 74 | 116 | - | - | |
| Cma07g00485 | 324 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
| Cma07g00485 | 324 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 122 | 171 | IPR006456 | - | |
| Cma07g00485 | 324 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cma07g00485 | 324 | SUPERFAMILY | Homeodomain-like | 257 | 321 | IPR009057 | - | |
| Cma07g00485 | 324 | MobiDBLite | consensus disorder prediction | 79 | 114 | - | - | |
| Cma07g00485 | 324 | Gene3D | - | 248 | 321 | - | - | |
| Cma07g00485 | 324 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 58 | 322 | - | - | |
| Cma07g00485 | 324 | Pfam | ZF-HD protein dimerisation region | 120 | 172 | IPR006456 | - | |
| Cma07g00485 | 324 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 260 | 317 | IPR006455 | - | |
| Cma07g00485 | 324 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 121 | 172 | IPR006456 | - | |
| Cma07g00485 | 324 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 7 | 58 | 322 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma03g00745 | Cma07g00485 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00248 | Cma-Chr5:1049849 | Cma07g00485 | Cma-Chr7:2110438 | 2.82E-68 | dispersed | |
| Cma06g00008 | Cma-Chr6:32657 | Cma07g00485 | Cma-Chr7:2110438 | 8.33E-54 | dispersed | |
| Cma07g00485 | Cma-Chr7:2110438 | Cma07g00562 | Cma-Chr7:2432332 | 9.10E-53 | dispersed | |
| Cma15g00273 | Cma-Chr15:1296186 | Cma07g00485 | Cma-Chr7:2110438 | 3.65E-22 | dispersed | |
| Cma16g00621 | Cma-Chr16:3204804 | Cma07g00485 | Cma-Chr7:2110438 | 9.00E-33 | dispersed | |
| Cma18g01152 | Cma-Chr18:9258379 | Cma07g00485 | Cma-Chr7:2110438 | 2.02E-44 | dispersed | |
| Cma03g00745 | Cma-Chr3:5899158 | Cma07g00485 | Cma-Chr7:2110438 | 1.27E-114 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35365 | PF04770 | ZF-HD_dimer | 1.50E-30 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00485 | - | - | csv:101220687 | 491.5 |