Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00098 ATGTCTAACTATGAAATTGCAGGAGTATTATCCACCACTTTCAGCATAGTAAATAAATGTGAGTACACAGTTTGGCCGGGAATTCTCTCCAACGCCGGAGTTCCACCACTTCCCGCCACCGGCTTCGTCCTCGCTGCTGGCGACTCCAAAACAATCTCTGCTCCGGGGTCATGGGGGGGCCGATTCTGGGGCCGGACCCACTGTTCACAAGACTCCAATGGAAAATTCTCTTGCCTCACTGGCGACTGCGGCTCCGACAAGGTCGAGTGCGGCGGGAACGGCGCGAAGCCGCCAGCCACTCTGGCGGAGTTCACCCTCGATGGCGCTAGCGGCCTTGACTTCTTCGATGTGAGTTTGGTCGATGGTTACAATATTCCTATGCTGGTTGTCCCGCAGGGCGGCACCGGCGAGAAATGTGTAAGCACCGGGTGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAGCTCAAGGTTTTCAGCGTGGACGGCGGAGAGAACGTCGCGTGTAAAAGCGCGTGTGAAGCTTTCAACGAACCGCAGTACTGTTGCAGTGGCGAGTACGCGACACCCGATACTTGCAAACCCTCTGCGTACTCGCAGGTGTTCAAAAGCGCGTGTCCACGCGCTTACAGCTACGCTTACGACGACAAAACCAGCACGTTTACATGTGCCGACGCCGATTATATCATCACATTCTGCCCTTCTCCCAACACAAGTCAGAAATCAACGGAAGGTCACAACACAAGCACGCCGGCAATAATTAATGGCGGCAACGACACTATGGTTTACGAAGGGGGGGCTGTATATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCGGTGTACTGGGGGTAGCCATTGCCACGGTGTCCATTCTTCAATCTCGGCAGCTCTTTTGA 900 55.0 MSNYEIAGVLSTTFSIVNKCEYTVWPGILSNAGVPPLPATGFVLAAGDSKTISAPGSWGGRFWGRTHCSQDSNGKFSCLTGDCGSDKVECGGNGAKPPATLAEFTLDGASGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVFSVDGGENVACKSACEAFNEPQYCCSGEYATPDTCKPSAYSQVFKSACPRAYSYAYDDKTSTFTCADADYIITFCPSPNTSQKSTEGHNTSTPAIINGGNDTMVYEGGAVYDLSGASRTTLRGVLGVAIATVSILQSRQLF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 437138 439259 - CmaCh09G000980.1 Cma09g00098 300103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00098 299 Gene3D Thaumatin 12 234 IPR037176 -
Cma09g00098 299 PANTHER BNAA02G17480D PROTEIN 8 258 - -
Cma09g00098 299 PRINTS Pathogenesis-related protein signature 13 25 IPR001938 -
Cma09g00098 299 PRINTS Pathogenesis-related protein signature 224 233 IPR001938 -
Cma09g00098 299 PRINTS Pathogenesis-related protein signature 61 72 IPR001938 -
Cma09g00098 299 PRINTS Pathogenesis-related protein signature 113 129 IPR001938 -
Cma09g00098 299 SMART tha2 14 234 IPR001938 -
Cma09g00098 299 Pfam Thaumatin family 18 234 IPR001938 -
Cma09g00098 299 CDD TLP-PA 13 233 - -
Cma09g00098 299 PANTHER OS03G0233200 PROTEIN 8 258 IPR001938 -
Cma09g00098 299 ProSiteProfiles Thaumatin family profile. 11 234 IPR001938 -
Cma09g00098 299 SUPERFAMILY Osmotin, thaumatin-like protein 12 235 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00313 Cma09g00098 CCT
Cma09g00098 Cma12g00403 CCT
Cma05g00313 Cma09g00098 ECH
Cma09g00098 Cma12g00403 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00098 Cma-Chr9:437138 Cma12g00404 Cma-Chr12:2094081 3.21E-144 dispersed
Cma04g01627 Cma-Chr4:8200999 Cma09g00098 Cma-Chr9:437138 1.14E-88 transposed
Cma01g01978 Cma-Chr1:12735370 Cma09g00098 Cma-Chr9:437138 1.29E-152 wgd
Cma12g00403 Cma-Chr12:2089523 Cma09g00098 Cma-Chr9:437138 4.56E-90 wgd
Cma03g00680 Cma-Chr3:5628886 Cma09g00098 Cma-Chr9:437138 6.10E-101 wgd
Cma05g00312 Cma-Chr5:1353680 Cma09g00098 Cma-Chr9:437138 9.40E-148 wgd
Cma07g00422 Cma-Chr7:1812385 Cma09g00098 Cma-Chr9:437138 1.03E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00098 - - csv:101214136 540.421