Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00285 | ATGGATTCTTTTGGAGGTCTCAGCGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCAATGGAGGAGCTTGATTTCACGCCACTTCTTCCTCCGCCCACGGCGGAGATGGCCGACTGGTTCTGTCATTTGGATTCTTTCACGCCCAATTTGCCTTCTTGTGCCAATGCTATCGATCAATTCCCCTGTATTGCTGCTGCTGATCATTATATGTCCATGTCTAATGCTGCCATTGAAGAGAACGAGATGGACTCCATCTTCTCAGCCTGTACTGACGTTTTGCTGCAAGAAATCTCTGTTTTTTCGGGTGAAGATAGATATCTAAACATGGATGTTCAAACCCAGATAGGGAATGATAATAATGCTACCAATTCTGCCAAGGCATTCCATCACAAAAGGAAATCCATTGTCGTCGCTGATGATGATCATCATCATCACAACAATCTCAACAACCCTACTAAGAAAATTCGTACTTCAAACAATCTTTTGGTCCAGAAAATTAGGAAAGCTACACAGAATAGCAATAAAAAATTGAGCACTCGGCGGCGCAAATGTGAAGAGGATCAGGAATCTGGAGGGCCTGATATGAACAGCTGCAGCAGCGCTAACTCATCAGAGGATGACAGCGCTTCACAAGATACTAATGGTGGTGGCGCTGTTTTAGAGGGCGAGGCATCGCCGCCACAAGCCAAAACCAGAGCCACCAGAGGCTCTGCTACTGATCCACAAAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGATGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCACCAGAAGCTTCCTTCTTTTTTGTGA | 972 | 44.65 | MDSFGGLSGEGEWDLCSSILSMEELDFTPLLPPPTAEMADWFCHLDSFTPNLPSCANAIDQFPCIAAADHYMSMSNAAIEENEMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQIGNDNNATNSAKAFHHKRKSIVVADDDHHHHNNLNNPTKKIRTSNNLLVQKIRKATQNSNKKLSTRRRKCEEDQESGGPDMNSCSSANSSEDDSASQDTNGGGAVLEGEASPPQAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMYAPIAYNGMDIGLHQKLPSFL | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1167219 | 1168558 | + | CmaCh09G002850.1 | Cma09g00285 | 300290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00285 | 323 | MobiDBLite | consensus disorder prediction | 194 | 217 | - | - | |
Cma09g00285 | 323 | Gene3D | - | 241 | 305 | IPR036638 | GO:0046983 | |
Cma09g00285 | 323 | PANTHER | TRANSCRIPTION FACTOR BHLH54 | 69 | 321 | - | - | |
Cma09g00285 | 323 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 239 | 288 | IPR011598 | GO:0046983 | |
Cma09g00285 | 323 | SMART | finulus | 245 | 294 | IPR011598 | GO:0046983 | |
Cma09g00285 | 323 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 69 | 321 | - | - | |
Cma09g00285 | 323 | MobiDBLite | consensus disorder prediction | 153 | 175 | - | - | |
Cma09g00285 | 323 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 238 | 305 | IPR036638 | GO:0046983 | |
Cma09g00285 | 323 | MobiDBLite | consensus disorder prediction | 140 | 249 | - | - | |
Cma09g00285 | 323 | Pfam | Helix-loop-helix DNA-binding domain | 249 | 289 | IPR011598 | GO:0046983 | |
Cma09g00285 | 323 | CDD | bHLH_AtIND_like | 240 | 302 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma09g00285 | Cma12g00596 | CCT | |
Cma05g00143 | Cma09g00285 | CCT | |
Cma09g00285 | Cma12g00596 | ECH | |
Cma05g00143 | Cma09g00285 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02297 | Cma-Chr4:16014445 | Cma09g00285 | Cma-Chr9:1167219 | 1.17E-25 | dispersed | |
Cma09g00285 | Cma-Chr9:1167219 | Cma10g00480 | Cma-Chr10:2188836 | 1.20E-21 | dispersed | |
Cma11g01701 | Cma-Chr11:11238101 | Cma09g00285 | Cma-Chr9:1167219 | 1.16E-51 | wgd | |
Cma12g00596 | Cma-Chr12:3109902 | Cma09g00285 | Cma-Chr9:1167219 | 1.81E-54 | wgd | |
Cma16g00324 | Cma-Chr16:1521773 | Cma09g00285 | Cma-Chr9:1167219 | 2.46E-54 | wgd | |
Cma19g00554 | Cma-Chr19:6318015 | Cma09g00285 | Cma-Chr9:1167219 | 1.61E-52 | wgd | |
Cma04g00451 | Cma-Chr4:2305604 | Cma09g00285 | Cma-Chr9:1167219 | 2.32E-53 | wgd | |
Cma05g00143 | Cma-Chr5:640612 | Cma09g00285 | Cma-Chr9:1167219 | 1.69E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35596 | PF00010 | HLH | 9.50E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00285 | - | - | csv:101209196 | 314.309 |