Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00285 ATGGATTCTTTTGGAGGTCTCAGCGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCAATGGAGGAGCTTGATTTCACGCCACTTCTTCCTCCGCCCACGGCGGAGATGGCCGACTGGTTCTGTCATTTGGATTCTTTCACGCCCAATTTGCCTTCTTGTGCCAATGCTATCGATCAATTCCCCTGTATTGCTGCTGCTGATCATTATATGTCCATGTCTAATGCTGCCATTGAAGAGAACGAGATGGACTCCATCTTCTCAGCCTGTACTGACGTTTTGCTGCAAGAAATCTCTGTTTTTTCGGGTGAAGATAGATATCTAAACATGGATGTTCAAACCCAGATAGGGAATGATAATAATGCTACCAATTCTGCCAAGGCATTCCATCACAAAAGGAAATCCATTGTCGTCGCTGATGATGATCATCATCATCACAACAATCTCAACAACCCTACTAAGAAAATTCGTACTTCAAACAATCTTTTGGTCCAGAAAATTAGGAAAGCTACACAGAATAGCAATAAAAAATTGAGCACTCGGCGGCGCAAATGTGAAGAGGATCAGGAATCTGGAGGGCCTGATATGAACAGCTGCAGCAGCGCTAACTCATCAGAGGATGACAGCGCTTCACAAGATACTAATGGTGGTGGCGCTGTTTTAGAGGGCGAGGCATCGCCGCCACAAGCCAAAACCAGAGCCACCAGAGGCTCTGCTACTGATCCACAAAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGATGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCACCAGAAGCTTCCTTCTTTTTTGTGA 972 44.65 MDSFGGLSGEGEWDLCSSILSMEELDFTPLLPPPTAEMADWFCHLDSFTPNLPSCANAIDQFPCIAAADHYMSMSNAAIEENEMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQIGNDNNATNSAKAFHHKRKSIVVADDDHHHHNNLNNPTKKIRTSNNLLVQKIRKATQNSNKKLSTRRRKCEEDQESGGPDMNSCSSANSSEDDSASQDTNGGGAVLEGEASPPQAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMYAPIAYNGMDIGLHQKLPSFL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1167219 1168558 + CmaCh09G002850.1 Cma09g00285 300290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00285 323 MobiDBLite consensus disorder prediction 194 217 - -
Cma09g00285 323 Gene3D - 241 305 IPR036638 GO:0046983
Cma09g00285 323 PANTHER TRANSCRIPTION FACTOR BHLH54 69 321 - -
Cma09g00285 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Cma09g00285 323 SMART finulus 245 294 IPR011598 GO:0046983
Cma09g00285 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 321 - -
Cma09g00285 323 MobiDBLite consensus disorder prediction 153 175 - -
Cma09g00285 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 305 IPR036638 GO:0046983
Cma09g00285 323 MobiDBLite consensus disorder prediction 140 249 - -
Cma09g00285 323 Pfam Helix-loop-helix DNA-binding domain 249 289 IPR011598 GO:0046983
Cma09g00285 323 CDD bHLH_AtIND_like 240 302 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00285 Cma12g00596 CCT
Cma05g00143 Cma09g00285 CCT
Cma09g00285 Cma12g00596 ECH
Cma05g00143 Cma09g00285 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02297 Cma-Chr4:16014445 Cma09g00285 Cma-Chr9:1167219 1.17E-25 dispersed
Cma09g00285 Cma-Chr9:1167219 Cma10g00480 Cma-Chr10:2188836 1.20E-21 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma09g00285 Cma-Chr9:1167219 1.16E-51 wgd
Cma12g00596 Cma-Chr12:3109902 Cma09g00285 Cma-Chr9:1167219 1.81E-54 wgd
Cma16g00324 Cma-Chr16:1521773 Cma09g00285 Cma-Chr9:1167219 2.46E-54 wgd
Cma19g00554 Cma-Chr19:6318015 Cma09g00285 Cma-Chr9:1167219 1.61E-52 wgd
Cma04g00451 Cma-Chr4:2305604 Cma09g00285 Cma-Chr9:1167219 2.32E-53 wgd
Cma05g00143 Cma-Chr5:640612 Cma09g00285 Cma-Chr9:1167219 1.69E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35596 PF00010 HLH 9.50E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00285 - - csv:101209196 314.309