Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00509 ATGAACACTCTCCGGATCTCATTCTCGTCGTTTCCACTGTTGAAGACACTCCCCAATTCTTCCTCGTTGAAACCGGCCCAAATCGCCGCAAATTCTGCTCACCGTCGAATCTTTGTCATGAATTCTAGCTCGAAGCTTGATTCTAGGTCGTCTTCGTCGTCGATATGTCAAGTTCCGGGGCTAGAATCGGAGGAGATGGACAGGATTGCGGAACAAATGTTCCGGCGGTATGCGTCTCCTTCTTCTTCGAGTGTTAAGAGAGGAAAAGGAGTGGCCATTGTATGGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCCCTGTATAAGGCCTGGATTTCGTCAGAGGCTGTGTTGCCGGTGTATTGCGTTGATCCGAGACTTTTTGGTTCTACCTGCTACTTTGGATTTCCTAAAACTGGAGCATTGAGAGCTCAATTTATTGTTGAATGCTTGGCTGATTTGAAAAGGAATTTAATAAACCGAGGTCTTAACTTGCTTATTCAACATGGGAAGCCTGAAGAAATTCTCCCTTCTCTTGCTAAAGCTCTTGGTGCCCACACAGTCTATGCTCAAATGGAAACTTGTAGTGAGGAACTATACGTTGAAAGAATGGTAAGCAAAGGACTCAAAACAGTGGTGCTATCACCAACCTCAGAGAAGTCTGCCAAGCCAAGCTCTGCTAAAAGCCTTACTTTGCAACTTGTTTGGGGCACCACGATGTACCACATAGATGACCTTCCATTTGATACCAACAGTTTGCCTGATGTCTACACTCAATTTCGTAAATCTGTTGAAGCTAAATGTGCTATCCGAGATTGCATTAGACTTCCAGCTCTTCTTGGACCTCCAGCAAGCATCGATAATTGGGGATGTGTTCCCTCGCTTGATAAGCTTGAGCTTCAACCGCCAAGTGTTGTTAAGGGCATGAGGTTTATTGGGGGTGAGACCGCTGCTCTCTCTAGAATCTATGAGTACTTCTGGAAGAAGGATTTACTACGGATCTACAAGGAAACAAGGAATGGGATGTTAGGACCTGACTACTCTACAAAATTCTCTCCATGGCTAGCTTCAGGAAGCATTTCACCACGTCTCATTCACGAAGAGGTAAAGAGATATGAGAAGGAAAGGGAAGCAAATCAATCTACTTATTGGGTGTTGTTCGAATTGATATGGAGGGATTACTTTAGGTTTCTTTCAGTCAAATATGGCAATTCTCTTTTTCATATAGGTGGCCCAAGAAAAGTGGATTCCAAATGGAGTCGAGACAAAAATTTGTTTGAATCATGGAGAGATGGCCGTACAGGGTATCCTCTAATAGATGCAAATATGAAGGAATTGTCAACAACTGGGTTCATGTCGAATCGAGGACGGCAGATAGTATGTTCCTTCCTTGTTCGAGATATGGGTATTGATTGGCGTATGGGAGCTGAATGGTTTGAGACATGCCTTCTGGATTATGACCCTTGCTCCAATTATGGAAATTGGACATATGGAGCTGGTGTTGGGAATGACCCTAGAGAAGATCGTTACTTCAGTATCCCCAAGCAAGCACAGACATACGATCCCGAGGGCGAATATGTAGCGTATTGGTTGCCGCAGCTACGAATGTTACCCAAAGATAAGAGGCATTTCCCAGGAAAAATGCTGTACATGGAACAAGTAGTAGCTCTGAAGTTTGGGAATGCTGGAAGGCCCCAAAGCCAAGACTATGCAAGAAGAAAAAACTTTGGGGGGAGACAAGCAAAGGACTTCAGAAGATAA 1764 44.39 MNTLRISFSSFPLLKTLPNSSSLKPAQIAANSAHRRIFVMNSSSKLDSRSSSSSICQVPGLESEEMDRIAEQMFRRYASPSSSSVKRGKGVAIVWFRNDLRVLDNEALYKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECLADLKRNLINRGLNLLIQHGKPEEILPSLAKALGAHTVYAQMETCSEELYVERMVSKGLKTVVLSPTSEKSAKPSSAKSLTLQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAKCAIRDCIRLPALLGPPASIDNWGCVPSLDKLELQPPSVVKGMRFIGGETAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSPWLASGSISPRLIHEEVKRYEKEREANQSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRKVDSKWSRDKNLFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDKRHFPGKMLYMEQVVALKFGNAGRPQSQDYARRKNFGGRQAKDFRR 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2285232 2289593 - CmaCh09G005090.1 Cma09g00509 300514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00509 587 Pfam FAD binding domain of DNA photolyase 388 555 IPR005101 -
Cma09g00509 587 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 409 564 - -
Cma09g00509 587 Gene3D HUPs 52 238 IPR014729 -
Cma09g00509 587 Pfam DNA photolyase 92 273 IPR006050 -
Cma09g00509 587 PANTHER CRYPTOCHROME DASH 74 563 - -
Cma09g00509 587 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 90 218 IPR006050 -
Cma09g00509 587 PANTHER CRYPTOCHROME 74 563 IPR002081 -
Cma09g00509 587 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 88 287 IPR036155 -
Cma09g00509 587 Gene3D - 239 408 - -
Cma09g00509 587 PRINTS DNA photolyase signature 435 451 IPR002081 -
Cma09g00509 587 PRINTS DNA photolyase signature 455 473 IPR002081 -
Cma09g00509 587 PRINTS DNA photolyase signature 494 508 IPR002081 -
Cma09g00509 587 MobiDBLite consensus disorder prediction 566 587 - -
Cma09g00509 587 TIGRFAM crypto_DASH: cryptochrome, DASH family 91 534 IPR014133 GO:0003913|GO:0006281
Cma09g00509 587 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 309 567 IPR036134 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01604 Cma09g00509 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00426 Cma-Chr8:2413630 Cma09g00509 Cma-Chr9:2285232 3.71E-64 dispersed
Cma09g00509 Cma-Chr9:2285232 Cma17g01084 Cma-Chr17:7677955 1.02E-55 dispersed
Cma09g00509 Cma-Chr9:2285232 Cma09g00512 Cma-Chr9:2291467 0 proximal
Cma01g01552 Cma-Chr1:10809413 Cma09g00509 Cma-Chr9:2285232 1.44E-08 transposed
Cma08g00639 Cma-Chr8:3621685 Cma09g00509 Cma-Chr9:2285232 3.42E-41 transposed
Cma01g01551 Cma-Chr1:10808284 Cma09g00509 Cma-Chr9:2285232 3.27E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00509 K25656 - csv:101221042 1061.98