Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00556 ATGTCAGGTGGCGGTTGCAGCATAGTTTGGTTCAGAAGAGATCTCAGGGTTGAAGATAACCCTGCTCTTACCGCCGCCGTCAGGTCCGGCGCCGTCGTTGCCGTCTTCATCTGGGCACCGGAGGAAGAAGGTCACTACTATCCCGGCAGAGTCTCGCGATGGTGGCTCAAACAGAGCTTGGCTCATCTCGATTCCTCTCTTAGAAGCCTTGGTACTTTTCTTGTCACTAAGAGATCCACCAACACCATTTCTGCTTTGCTCGACGTCGTTAAAGCCACTGGTGCTTCTCAGCTCTTCTTCAATCATTTATACGATCCTTTATCACTCGTTCGGGATCATCGAGCGAAGGAGGTGTTATCTGCTCAAGGCATCGGTGTGAGGTCGTACAATGCCGATTTACTGTACGAACCGTGGGACGTTAAGGATGCCAATGGCAATCCATTTACCACCTTTGCTGGTTTCTGGGAGAGATGTCTCAGCATGCCTTGTGATCCAGAGGCACCACTTCTCCCACCTAAGAGAATAATTTCAGGTGATGCATCTAGGAGGTGCCAATGTGACACATTGTTATTTGAAGACGAATCGGAGAAGGGAAGCAACGCGCTTCTTGCCCGAGCATGGTCTCCTGGATGGAGCAACGCGGACAAGGCTTTGACCACGTTCATCAATGGACCATTAATCGAGTACTCAAAGAATCGAAGGAAGGCAGATAGTGCAACCACCTCATTTCTGTCTCCCCACTTACATTTCGGAGAGGTAAGCGTGAGAAAAGTGTTTCATCTCGTTCGAATGAAGCAGGTTTTATGGGCGAATGAAGGGAACAAGGCTGGCGAAGAGAGTGTCAACTTGTTTCTCAAGTCTATAGGGCTCAGAGAGTATTCCAGATACATGAGTTTCAACCATCCGTACAGTCATGAAAGGCCTCTTCTTGGGCATCTTAAATTCTTCCCTTGGGTTGTGGATGAAGGCTATTTTAAAGCATGGAGGCAAGGAAGGACTGGTTATCCATTAGTGGATGCTGGTATGAGAGAATTGTGGGCTACGGGGTGGCTGCACGATCGGATCCGAGTTGTAGTTTCGAGTTTCTTTGTCAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTACTTCTGGGATACTCTCTTGGATGCCGACCTTGAGAGTGATGCTCTTGGTTGGCAATACATATCTGGCACTCTTCCCGATAGTCGTGAATTTGATCGTATCGACAACCCACAGCTTGAGGGTTATAAATGCGACCCGTATGGAGAATACGTCCGGAGATGGCTTCCTGAACTTTCTAGATTGCCCACTGAATGGATTCATCATCCATGGAATGCACCGGAGTACGTACTCCAAGCTGCTGGGATCGAGCTTGGATCGAACTACCCCCTTCCCATCGTAGGGCTGGATGCAGCTAAAGCAAGGTTGGAAGAAGCGCTGTCGGAGATGTGGCAACAAGAAGCAGCTTCAAGGGCTGCGATCGAGAATGGAACTGAAGAGGGACTTGGGGACTCTTCCGAGTCGATCCCAATTGCATTTCCTCAGGAAATAACAATGGAGGAGGAGGACGTTGAGCCTGCAAGGATGAACGCTCATACGATTCGGTGCTACGAGGATCAGATGGTCCCAAGCATGACGAGTTCGGTGAGATTAGGAGATGAACCTTCTCTGAACATTCAAAGTACAGCAGAAGATGGTAGAGCAGAAGTACCTATAAATGCAAATTTAAACCAAGAGCCAACCAGAAATGTAGTGAACCCAAGAGTTCGGCCAACCAATCCAACGCAGACTCGACTTCCCTATACCCCAGGTATCGGCCTAGGAACTGCTGCTGAAGATTCCACTGCAGAGTCCTATTCCAGTAGTGATGTGAGACGAGAGAGAGACGGAGGTGTGGTGCCTGTTTGGTCTCCACCGAGTTCGAGTTACACCGAGCAGTTTGTGGTCGACGAAAATGGCATCGGAACAAGCTCTTCGTTCTTGCAAGGGCATCAACAGAGTCATCAAATAATTAACTGGAGGCAGCTATCTCAGACTGGGTAA 2049 49.05 MSGGGCSIVWFRRDLRVEDNPALTAAVRSGAVVAVFIWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTFLVTKRSTNTISALLDVVKATGASQLFFNHLYDPLSLVRDHRAKEVLSAQGIGVRSYNADLLYEPWDVKDANGNPFTTFAGFWERCLSMPCDPEAPLLPPKRIISGDASRRCQCDTLLFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKCDPYGEYVRRWLPELSRLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGLDAAKARLEEALSEMWQQEAASRAAIENGTEEGLGDSSESIPIAFPQEITMEEEDVEPARMNAHTIRCYEDQMVPSMTSSVRLGDEPSLNIQSTAEDGRAEVPINANLNQEPTRNVVNPRVRPTNPTQTRLPYTPGIGLGTAAEDSTAESYSSSDVRRERDGGVVPVWSPPSSSYTEQFVVDENGIGTSSSFLQGHQQSHQIINWRQLSQTG 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2529295 2533065 + CmaCh09G005560.1 Cma09g00556 300561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00556 682 MobiDBLite consensus disorder prediction 586 604 - -
Cma09g00556 682 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Cma09g00556 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Cma09g00556 682 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 483 IPR014134 GO:0009785|GO:0009882
Cma09g00556 682 PRINTS DNA photolyase signature 143 159 IPR002081 -
Cma09g00556 682 PRINTS DNA photolyase signature 333 349 IPR002081 -
Cma09g00556 682 PRINTS DNA photolyase signature 353 371 IPR002081 -
Cma09g00556 682 PRINTS DNA photolyase signature 392 406 IPR002081 -
Cma09g00556 682 PANTHER CRYPTOCHROME 1 604 IPR002081 -
Cma09g00556 682 Gene3D - 134 294 - -
Cma09g00556 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Cma09g00556 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Cma09g00556 682 Pfam Blue/Ultraviolet sensing protein C terminal 512 624 IPR020978 -
Cma09g00556 682 PANTHER CRYPTOCHROME-1 1 604 - -
Cma09g00556 682 Pfam FAD binding domain of DNA photolyase 284 482 IPR005101 -
Cma09g00556 682 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Cma09g00556 682 Gene3D HUPs 8 207 IPR014729 -
Cma09g00556 682 Pfam DNA photolyase 7 161 IPR006050 -
Cma09g00556 682 MobiDBLite consensus disorder prediction 586 639 - -
Cma09g00556 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 489 IPR036134 -
Cma09g00556 682 Coils Coil 471 491 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01439 Cma09g00556 CCT
Cma01g01604 Cma09g00556 CCT
Cma01g01439 Cma09g00556 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00165 Cma-Chr17:851311 Cma09g00556 Cma-Chr9:2529295 0 transposed
Cma01g01604 Cma-Chr1:11059657 Cma09g00556 Cma-Chr9:2529295 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00556 K12118 - csv:101213649 1314.29