Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00559 ATGTCCAGTTTAATCAGCAAAAGCAACCAAATCAAAATTCTGATGGCTTGGCGCCTTCTCGTCACCAACCTAAAATCCCCTGAAACCCTAACCCTAACAAACTCCCTCCGCCATTCCTCTGCTTCCTTCTTCAACCAGAAACTCCCATTTTCCACCTCCTTCCTCATCACCAAGCTCCCCAAGAAGTTCAGGAAGAAACGCAAGAAGCAAGAAAGCCCTAGAACCAAGCTTGTCCAATCCGAACCTAATCGCATTTCTTACTTCGAGCGCATCGTTGAAACAGATTCCTTCTTCAGATTCCTTTTTAAATCGAAGGATTTCCTTTCAAAGCAGCCGGAGCACGTTCTTCGCCTCGACGATGCCGGTAAGCTCTATCGCGAACTCGGCTTCCCGAGAGGACGCAAGGTCGCTCGATCTATTGAGCGCCATCCGCTCATGTTCGAACCCTACCGTCACGTGGATGGGAAAATGTGGTTTGGATTTACCGAGTTTATGGAGAGGTTGATCGAGGAAGAGAAGAGGATTATGGACTCGATGGAGATGGATAGGGTTAGAACTGTGAGGAAGTTGTTGATGATGTCGGCGAATAAGCGAATTCCATTGTCGAAAATCTATCACTGCAGATCGGTGTTTGGGATTCCAGAGGATTTTAGAGATCGAGTGGGGAAATATCCGGATTTCTTCAGAGTTGTGGTGGAAGATGATGGGAAGAGGGTGCTGGAATTGGTCAATTGGGATCCTCTACTGGCTGTTAGTGAGCTCGAGAGAGAGTTCGTGGTGAACGAAGATAAGGCGAAAAGGGCGTTCAAGTTTCCTGTGAAACATGGGAAGGATTTGGATTTGGATGAGGATGATACGAGGAAGCTGAATTTGTTGAATACACTTCCATTGGTTTCGCCATATTCGGACGGATCGAAGCTGGAACTTTGGACATTGGAAGCAGAGAAGTACAGGGTTGGCGTGGTGCATGAGTTCTTGAGCTTGACATTGGAGAAGAAGGCTTCTATTCATCATATTGTGGAGTTTAAGGAGGAGTTCAGCTTGACTAAGCACACTTATCAGATGCTTCTGAAGCAACCCAGAACCTTTTATCTGGCTGGGACGGAAATGAATTGGGTTGTTTTTTTGAAGGATGCATACAATGAAAATGGCGACTTGATTGAGAAGGATCCTCAAGTTGTTTTCAACGAGAAGCTGCGTAGATATGCTCAAATGCAGAAGATGGAATGA 1230 45.93 MSSLISKSNQIKILMAWRLLVTNLKSPETLTLTNSLRHSSASFFNQKLPFSTSFLITKLPKKFRKKRKKQESPRTKLVQSEPNRISYFERIVETDSFFRFLFKSKDFLSKQPEHVLRLDDAGKLYRELGFPRGRKVARSIERHPLMFEPYRHVDGKMWFGFTEFMERLIEEEKRIMDSMEMDRVRTVRKLLMMSANKRIPLSKIYHCRSVFGIPEDFRDRVGKYPDFFRVVVEDDGKRVLELVNWDPLLAVSELEREFVVNEDKAKRAFKFPVKHGKDLDLDEDDTRKLNLLNTLPLVSPYSDGSKLELWTLEAEKYRVGVVHEFLSLTLEKKASIHHIVEFKEEFSLTKHTYQMLLKQPRTFYLAGTEMNWVVFLKDAYNENGDLIEKDPQVVFNEKLRRYAQMQKME 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2540880 2542109 - CmaCh09G005590.1 Cma09g00559 300564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00559 409 Pfam Plant organelle RNA recognition domain 84 407 IPR021099 GO:0003723
Cma09g00559 409 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 15 409 IPR045040 GO:0003723
Cma09g00559 409 PANTHER OS09G0473400 PROTEIN 15 409 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01640 Cma09g00559 CCT
Cma05g00350 Cma09g00559 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00559 Cma-Chr9:2540880 Cma17g00564 Cma-Chr17:4602049 1.60E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00559 - - mcha:111004979 707.983