Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00924 ATGATCCCACGTTTTTTTGTAATTGTTCGAGAAATGGTATCCCCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTCATCGACGACATCCCTGTACCGGATGCGAATTTTCCGGTCACGAGTTCAAGTTTCTCCTGGGCTGTTCAGCCCTTAAACGGCTCCCCTGATGCCGGTAATTGGTTCATACGTCCTACTTATGACATGAAGATTGAGAGATTGTGGGGGAATGATTTGGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGGTGAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTTCGGAGGGATAGGCTCAATGACAGGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCCAAAACTGACAAGGCAGCGATTTTAGTCGATGCTGTTCGAATGGTGAATCAGTTGCGTAGTGAGGCTTGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAAAAGATTTAA 498 43.57 MIPRFFVIVREMVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIERLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4612273 4614722 + CmaCh09G009240.1 Cma09g00924 300929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00924 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 162 IPR036638 GO:0046983
Cma09g00924 165 SMART finulus 102 153 IPR011598 GO:0046983
Cma09g00924 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
Cma09g00924 165 CDD bHLH_AtILR3_like 104 165 - -
Cma09g00924 165 Coils Coil 144 164 - -
Cma09g00924 165 PANTHER BHLH TRANSCRIPTION FACTOR 12 165 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma09g00924 165 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Cma09g00924 165 PANTHER TRANSCRIPTION FACTOR ILR3 12 165 - -
Cma09g00924 165 Gene3D - 97 165 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01152 Cma09g00924 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00924 Cma-Chr9:4612273 Cma18g00230 Cma-Chr18:1237799 4.76E-27 dispersed
Cma01g01152 Cma-Chr1:8424445 Cma09g00924 Cma-Chr9:4612273 2.27E-66 wgd
Cma13g00706 Cma-Chr13:6387711 Cma09g00924 Cma-Chr9:4612273 1.01E-30 wgd
Cma16g00846 Cma-Chr16:4970716 Cma09g00924 Cma-Chr9:4612273 6.93E-51 wgd
Cma02g00147 Cma-Chr2:699901 Cma09g00924 Cma-Chr9:4612273 1.76E-25 wgd
Cma20g00638 Cma-Chr20:2971125 Cma09g00924 Cma-Chr9:4612273 9.79E-34 wgd
Cma04g00938 Cma-Chr4:4834656 Cma09g00924 Cma-Chr9:4612273 6.95E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35644 PF00010 HLH 9.00E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00924 - - csv:101215402 219.55