Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00113 ATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTAAACCTCTGTTTTTCAGTCTTGTACCACTTCCCTCTCCCAACTTCCGCCATTAACGAACAGGGTCAAGCTCTACTCACTTGGAAGCTGAGTTTCAATGGATCAAACCAGGCGGCTCTACGTAATTGGGACCCTAACAACCAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACACAAACAGAGAAGTAGTGGAAGTAGTACTGAGGGACGTGGAACTACCTGGTGAACTTCCTTCAAATTTCTCTTCACTCTCGTCCTTGAACAGGCTCGTCTTGTCTGGTGTGAACCTCACCGGTTCCATTCCTAAAGAGATCGGTGTTCTTACCCAGCTCCAGACCTTGGAACTTAGTGACAATGGCTTAACTGGAGAAATCCCAAGTGAAATATGTGCCTTGCTAGATCTCGAACAGCTTGACCTCAATTCGAATCATCTCGAAGGATCAATACCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTGTATGACAATCAGTTAAGTGGTGAAATTCCCATTAGTATAGGAAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACTTGGTTCTGTGCCGGAAGAAATTGGTAACTGCAGCAGTTTGGAGATTCTTGGTCTAGCTGAAACAAGCATCTCGGGCTTCCTTCCATCCAGTCTTGGCCGCCTCAAGAAGCTTCAAACATTGGCAATCTATACTACGCTACTCTCCGGCCAGATTCCTCATGAACTTGGCGACTGCACTGAGCTCCAAAACGTTTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCAAGCACGTTAGGAAGGTTACAAAATCTCCAGAGTTTGCTAGTATGGCAGAACAATTTGGTCGGCGTTATACCGGTGGAGCTAAGTAAGTGTAGCCAATTATTGGTCATCGACATTTCAATTAATTCCTTGACAGGAAGCATTCCTTCAACGTTTGGGAACTTGACATTGCTCCAAGAATTGCAACTGAGTTCAAATCAATTATCCGGTGAGATTCCTAAGGAGATCGGAAGCTGTTCGAGAATCACTCATATCGAGCTTGATAATAACCAGCTCACTGGTACGATCCCCTCTGAATTGGGAAATCTCACCAATCTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCACCCACCATTTCCAATTGTGGTAACCTCGAGGCTTTGGATTTATCATTGAACGCCTTGACAGGTTCGATTCCGACTGGAGTTTTCGAGTTGAAAAAGCTTTCCAAGCTTCTGCTCCTCTCCAACAACCTGTCTGGTGTGATACCGCCGGCGATTGGTAACTGTTCGTCTCTGTTTCGGTTACGAGCGAATGACAACAAGCTCACAGGAGAAATTCCGCCGGAGATTGGGAATTTGAAGAGCTTGATTTTCCTAGACCTTGGAAACAATCGCCTCACTGGAGCGTTGCCTCCGGAGATCTCCGGCTGTCGAAATTTGACATTCCTCGATTTGCATTCCAACTCTATAACAAAATTTCTTCCAGAAGAATTCAACCAGCTTTCTTCGCTCCAGTACGTTGATCTCTCAAATAATCAAATCGAAGGGATGCCGAATCCGAGTTTTGGAGCTTTCAACTCGCTCACGAAACTAATTCTCTCAAACAACCACTTCTCGGGGCCTGTACCGACTGAAATCGGTTCCTGCTTGAAACTTCAGTTACTGGATTTAAGTTGCAATCAGCTCTCTGGAAATGTTCCTCCGAGCTTAGGGAAGATTCCTTCACTAGAAATTGGTCTCAATCTGAGCGTAAACCATCTGACCGGCGAGATTCCCCCGGAGTTTGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCAGGCGACCTCCACATTCTCGCAGACCTGAAAAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGACGTGTGCCAGAGACGTCATTCTTCACGCTGCTTCCTTTAAGCGTCCTCTCGGGGAATCCGGACTTGTGTTTCGCCGGCGAAAAATGTTACGCCGATAACCACACAGGCGGCGGTCACCACACGCTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACGGCGTGCGCACTGCTACTAGCGGCAGTATATATCATTCTCAAAGATAGACATTCGTGTCAAGGATGCTTCAATGGGTCCCGCGGTGAAGATTCAGACGCCGCCTTTGATAGCGACCTGGAGCTTGGCTCAGGCTGGGAAGTGACATTATACCAGAAGCTTGATCTTTCAATCTCAGACGTAATCAAGTGCTTAACGCCGGCCAACGTAATCGGCCGCGGCAAGACCGGCGTGGTGTACAGAGTCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCAGATAAGTTCTCGGCGGCGGCGTTTTCATCCGAAATCGCAACACTGGCGAGAATCCGGCATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGACTACTTGCCGAACGGGAATTTGGGCGAGTTGCTACACGAGGGAAATGGGCGCGTGGGGTTGGACTGGGAGAGTAGATTCAAGATAGCATTGGGAGTGGCGGAGGGTTTGGCTTATTTGCACCACGACTGCGTGCCGGCAATATTGCACCGGGACGTTAAGGCTCACAACATTCTGTTGGGGGATCGCTACGAGGCGTGTTTGGCGGACTTTGGGCTCGCCCGCTTGGTTGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCCGGTTCTTACGGCTACTTTGCACCCGAGTATGGATGCATGTTAAGGATCACAGAAAAGAGTGATGTGTATAGCTACGGCGTCGTTTTGTTGGAGTTAATTACGGGTAAAAAACCTGCAGACTCATCATTTGCAGAGGGTCAACACGTGATTCAATGGGTGAGAGATCATTTAAAGAAGAAGAAAGATCCAATTTTGATCATGGATCCCGAACTCCAAGGTCGACCCGACCCGCAAATTCAAGAGATCCTCCAAACATTAGGAATTTCCCTACTCTGCACTAGCGACCGTTCTGAAGAAAGACCAACAATGAAAGACGTGGCAGCTCTTTTACGGGAGATCCAACAAGATCACTTGGCAAACGTAGCAGAGGCCATTGACAAGCCGCCACGAAACAATAGCAATGCAACAAGTTTGGAAACAACGTCATTTTCATCCTCCTCTTCTACAACTCATGCGAGTCATTTGCTTTTCACGTTGCCTCTTCAGGAGTCGTCACGTTGCTCTTATGTGTCATTGTCCTCATCAAGCACGTATACGCCGCGTGAACAATGA 3402 48.0 MPVNSWTLPSSILILNLCFSVLYHFPLPTSAINEQGQALLTWKLSFNGSNQAALRNWDPNNQTPCGWFGITCNTNREVVEVVLRDVELPGELPSNFSSLSSLNRLVLSGVNLTGSIPKEIGVLTQLQTLELSDNGLTGEIPSEICALLDLEQLDLNSNHLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGSVPEEIGNCSSLEILGLAETSISGFLPSSLGRLKKLQTLAIYTTLLSGQIPHELGDCTELQNVYLYENSLSGSIPSTLGRLQNLQSLLVWQNNLVGVIPVELSKCSQLLVIDISINSLTGSIPSTFGNLTLLQELQLSSNQLSGEIPKEIGSCSRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCGNLEALDLSLNALTGSIPTGVFELKKLSKLLLLSNNLSGVIPPAIGNCSSLFRLRANDNKLTGEIPPEIGNLKSLIFLDLGNNRLTGALPPEISGCRNLTFLDLHSNSITKFLPEEFNQLSSLQYVDLSNNQIEGMPNPSFGAFNSLTKLILSNNHFSGPVPTEIGSCLKLQLLDLSCNQLSGNVPPSLGKIPSLEIGLNLSVNHLTGEIPPEFANLDKLGSLDLSYNQLSGDLHILADLKNLVVLNVSHNNFSGRVPETSFFTLLPLSVLSGNPDLCFAGEKCYADNHTGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCQGCFNGSRGEDSDAAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRVCISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGELLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLELITGKKPADSSFAEGQHVIQWVRDHLKKKKDPILIMDPELQGRPDPQIQEILQTLGISLLCTSDRSEERPTMKDVAALLREIQQDHLANVAEAIDKPPRNNSNATSLETTSFSSSSSTTHASHLLFTLPLQESSRCSYVSLSSSSTYTPREQ 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 477560 481993 + CmaCh10G001130.1 Cma10g00113 301429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00113 1133 MobiDBLite consensus disorder prediction 1077 1098 - -
Cma10g00113 1133 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Cma10g00113 1133 ProSiteProfiles Protein kinase domain profile. 785 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00113 1133 Gene3D Ribonuclease Inhibitor 434 698 IPR032675 -
Cma10g00113 1133 Gene3D Ribonuclease Inhibitor 204 433 IPR032675 -
Cma10g00113 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Cma10g00113 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1080 - -
Cma10g00113 1133 Gene3D Transferase(Phosphotransferase) domain 1 861 1084 - -
Cma10g00113 1133 SUPERFAMILY RNI-like 322 679 - -
Cma10g00113 1133 ProSitePatterns Protein kinases ATP-binding region signature. 791 813 IPR017441 GO:0005524
Cma10g00113 1133 ProSiteProfiles Leucine-rich repeat profile. 510 531 IPR001611 GO:0005515
Cma10g00113 1133 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00113 1133 SUPERFAMILY Protein kinase-like (PK-like) 777 1060 IPR011009 -
Cma10g00113 1133 Gene3D Phosphorylase Kinase; domain 1 768 860 - -
Cma10g00113 1133 SMART LRR_sd22_2 508 531 - -
Cma10g00113 1133 SMART LRR_sd22_2 123 146 - -
Cma10g00113 1133 SMART LRR_sd22_2 532 550 - -
Cma10g00113 1133 SMART LRR_sd22_2 629 654 - -
Cma10g00113 1133 SMART LRR_sd22_2 388 417 - -
Cma10g00113 1133 SMART LRR_sd22_2 171 197 - -
Cma10g00113 1133 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Cma10g00113 1133 Pfam Leucine rich repeat 509 569 IPR001611 GO:0005515
Cma10g00113 1133 SUPERFAMILY L domain-like 48 401 - -
Cma10g00113 1133 PANTHER OS01G0170300 PROTEIN 3 1080 - -
Cma10g00113 1133 MobiDBLite consensus disorder prediction 1074 1098 - -
Cma10g00113 1133 SMART serkin_6 785 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00113 1133 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Cma10g00113 1133 SMART LRR_typ_2 292 316 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 556 580 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 652 676 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 413 436 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 484 508 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 388 412 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 123 147 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 509 531 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 340 364 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 532 555 IPR003591 -
Cma10g00113 1133 SMART LRR_typ_2 171 195 IPR003591 -
Cma10g00113 1133 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00113 Cma18g00183 CCT
Cma10g00113 Cma11g00083 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00113 Cma-Chr10:477560 Cma17g00118 Cma-Chr17:586539 0 dispersed
Cma10g00113 Cma-Chr10:477560 Cma11g00083 Cma-Chr11:405029 0 wgd
Cma10g00113 Cma-Chr10:477560 Cma18g00183 Cma-Chr18:938258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68821 PF00069 Pkinase 1.90E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00113 - - cmos:111429763 2067.74