Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00191 ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGTATCGGCATCCTCATTCTCTTCGCCTTCCTCGTTTCGCATCCACCGCTTCACTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTCAACAAAACTCAACGCTTCACTTCGATAGAGAGCCGCTGATTTCTCTCATAAAATCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACTTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTATTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCAAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCCTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGATTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTCTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTAAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCAAACCTGATAAAGTTACCTGTTTACTTCTTCTCCAAGCCTGTGCGGACTTGAATGCATTGGAATTTGGCGAAAGGATTCATAGTCATATTCAACAGCACGGTTATAATACCGAGAGTAATTTGTGCAATTCGCTGATATCCATGTATTCGAGGTGTGGACGTGTGGATAAGGCGTATGAAGTGTTCGATAAAATGCCTGAGAAAAATGTTGTTTCATGGAGTGCGATGATTTCCGGGTTATCAATGAATGGACACGGGAGAGAAGCTATTGAAGCGTTTTGGGCGATGCAAAAGAAGGGTGTTGAGCCTGATGATCACACTTTCACTGCCGTTCTTTCTGCTTGTAGCCATTGTGGTCTGGTTGATGAAGGAATGGCGTTTTTTGATCGTATGAGACAAGAGTTCATGATAGTTCCCACCGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGACCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAATCCAGATGCGACAATGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCGTAATTGAGCATTTGGTTGAACTCAAATCTCAAGAAGCAGGTGATTATGTGCTGCTGCTGAACATTTATTCTTCGGCTGGGAACTGGGACAAGGTAACTGAATTGAGGAAATTCATGAAGGAAAGGGGTATCTATACTACACCCGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCGATGAAGGACAAGATCTACAAGCAGCTGGATGAGATCAACCAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAACTTAAAGGCAGAAGATAAGGGGTATGCGCTTTCTTTCCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACCCCGCCAGGAGGAACCATCAGAGTGGCAAACAATCTTCGTACTTGCCTGGATTGTCATAACTTTGCTAAGTATGTCTCAAGTGTTTATAACAGAAAAGTGGTTGTTAGGGACCGAAGTCAGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG 1887 44.73 MTVIFRRCRCSAYRHPHSLRLPRFASTASLLHSPISLLSSKFRQQNSTLHFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERQGVHADPLSSSFALKSCIRMLSLFSGIQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLKDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCKPDKVTCLLLLQACADLNALEFGERIHSHIQQHGYNTESNLCNSLISMYSRCGRVDKAYEVFDKMPEKNVVSWSAMISGLSMNGHGREAIEAFWAMQKKGVEPDDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIVPTVHHYGCMVDLLGRAGMLDQAYQLVMSMEVNPDATMWRTLLGACRIHGHANLGERVIEHLVELKSQEAGDYVLLLNIYSSAGNWDKVTELRKFMKERGIYTTPGCTTIELNGVVHEFAVDDISHPMKDKIYKQLDEINQQLKIAGYEAEISSELHNLKAEDKGYALSFHSEKLAIAFGVLATPPGGTIRVANNLRTCLDCHNFAKYVSSVYNRKVVVRDRSQFHHFREGRCSCNDYW 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 870899 872785 + CmaCh10G001910.1 Cma10g00191 301507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00191 628 Pfam PPR repeat family 320 368 IPR002885 -
Cma10g00191 628 Pfam PPR repeat family 217 267 IPR002885 -
Cma10g00191 628 Pfam PPR repeat 295 317 IPR002885 -
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Cma10g00191 628 Pfam E motif 440 500 IPR046848 -
Cma10g00191 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Cma10g00191 628 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 49 620 - -
Cma10g00191 628 PANTHER OS08G0434000 PROTEIN 49 620 - -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 293 322 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 121 152 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 358 386 IPR002885 -
Cma10g00191 628 TIGRFAM PPR: pentatricopeptide repeat domain 220 247 IPR002885 -
Cma10g00191 628 Pfam PPR repeat 120 149 IPR002885 -
Cma10g00191 628 Pfam PPR repeat 395 420 IPR002885 -
Cma10g00191 628 Gene3D Tetratricopeptide repeat domain 120 268 IPR011990 GO:0005515
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 386 IPR002885 -
Cma10g00191 628 Gene3D Tetratricopeptide repeat domain 269 384 IPR011990 GO:0005515
Cma10g00191 628 Gene3D Tetratricopeptide repeat domain 385 563 IPR011990 GO:0005515
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Cma10g00191 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 320 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00191 Cma11g00143 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00191 Cma-Chr10:870899 Cma01g01066 Cma-Chr1:7887582 1.51E-151 dispersed
Cma10g00191 Cma-Chr10:870899 Cma10g00565 Cma-Chr10:2591943 6.62E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00191 - - mcha:111007242 1105.12