Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00290 ATGACTAGCCATTGCCCCGTTGGAGCTCTTCAAAGCTCGTCGTCCATAACAATGCTGCCATTACCGTACCTGCAACTTCGAAGGATTTTAATTCGATCTCTAGCATCGTCTTCTTCGTTATCTGCTGGTTCGTCTTCGAATTTTTTGAATGAATCTGCGAGGAGCTTTCTTTTACATCGGAATTTGACGCCTCTCATCCACCACTTCCGTCATCATGGGGCGGCAGGGAGGTTATCTTATCCTTTGCAGCTCTCACTTTCTCATTCGTTCTCCTCCGAATCCGGGGAGAATGACGTGGATCAATCATCGCAGTCACTTGCAACCGAGCTTCTCAAGGACCCTGATTTGGTTCCTCTTCCTATTACGAAGCGCCTTCAGCTTAGCTTTTCGCATGTTAAACCGAATCCAGAGTTAGTCCTCAATACGCTCAATCTCTCCTCGGAAGCTGGTCGGACGGTGTTGGGGTTTAATGACTGGTTAGTATCGAATCCTGATTTTCATCACACGGATGAGACTATCTCGTATTTTGTTGATTATTTTGGTCGTATAAAGGATTTCAATGCGATTCATGAAGTTCTTGCGAAAGGTTTAGGTATCAGTGGGGCTAAAACCCTGCGGTCGTCTATTGATCGGTTCGCTCGTGCCGGGCGACCGACAAAGCTGATCTCATTTTTTGAGACGATGGAGAAGAATTACGGGCTTAAGAGGGATAAAGAGTCACTTAGAATGGTGGTGGAGAAGCTTTGTGAAAATGGCTACGCGAGCCATGCTGTAAAGATAGTCAAAGACTTGGCGAACGAGTTTTTCCCTGACGAAGCAATATGCGATTCTCTGATCAAAGGATGGTGCGTCAATGGGAAACTAGATGAAGCAAAAAGGCTGGCGAGTGAGATGTACAGGGGAGGGTTTGAGTTAGGGACAACGGCATATAATGATCTACTTGACTGTGCTTGCAAGCTTTGTAGGAAAAAGGATCCGTTCAGACTTCACTCTGAAGCTGAGGAGATTCTGGTGGAAATGGATTATCGTGGGGTTCCACGAAATGTGGAAACCTTCAATGTGCTGATCAATAATTTGTGCAAGATCAGGAAAACTACCGATGCATTAGATTTGTTTCATCGAATGGGGGAGTGGGGATGCCATCCTAATTCTGAAACGTTCATTATTTTGACTAAAAGTCTGTATCAAGCAGCAAGGACGGGAGAGGGAGATGAAATGATTGACAGGATGAGGTCTGCAGGACATGGTGATGCACTTGATAAGAAGACTTACTATGAGTTTCTAAACACTTTGTGTGGGATCGAGAGGATTGATCATGCCTTGACTGTCTTTGAAAAAATGAAGGAGGAGGGGTGTGAACCTGGGATTAAGACATATGAGCTATTAATGGCAAATCTCTGTGCTCATAATCATCTGGACAAAGCAAATTCACTCTTTATTGAAGCTCAAAAACGGGGAGTGCCAGTTCCAAAAGCATGTCAGGTGGATCCAGGATATGTGAAGATGCCAAAGGTAAAGAACGTCGAGAAGAAGAGGGAGACGTTGCCCGAAAAAATGGCGAGGAAGAGGAGGCGACTGAAGCAAATTTGA 1590 44.97 MTSHCPVGALQSSSSITMLPLPYLQLRRILIRSLASSSSLSAGSSSNFLNESARSFLLHRNLTPLIHHFRHHGAAGRLSYPLQLSLSHSFSSESGENDVDQSSQSLATELLKDPDLVPLPITKRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNDWLVSNPDFHHTDETISYFVDYFGRIKDFNAIHEVLAKGLGISGAKTLRSSIDRFARAGRPTKLISFFETMEKNYGLKRDKESLRMVVEKLCENGYASHAVKIVKDLANEFFPDEAICDSLIKGWCVNGKLDEAKRLASEMYRGGFELGTTAYNDLLDCACKLCRKKDPFRLHSEAEEILVEMDYRGVPRNVETFNVLINNLCKIRKTTDALDLFHRMGEWGCHPNSETFIILTKSLYQAARTGEGDEMIDRMRSAGHGDALDKKTYYEFLNTLCGIERIDHALTVFEKMKEEGCEPGIKTYELLMANLCAHNHLDKANSLFIEAQKRGVPVPKACQVDPGYVKMPKVKNVEKKRETLPEKMARKRRRLKQI 529
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 1286483 1288144 - CmaCh10G002900.1 Cma10g00290 301606
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00290 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Cma10g00290 529 Pfam Pentatricopeptide repeat domain 438 464 IPR002885 -
Cma10g00290 529 Gene3D Tetratricopeptide repeat domain 180 322 IPR011990 GO:0005515
Cma10g00290 529 Gene3D Tetratricopeptide repeat domain 323 404 IPR011990 GO:0005515
Cma10g00290 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Cma10g00290 529 Pfam PPR repeat family 348 394 IPR002885 -
Cma10g00290 529 Pfam PPR repeat 277 302 IPR002885 -
Cma10g00290 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Cma10g00290 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 63 529 - -
Cma10g00290 529 PANTHER ATPASE EXPRESSION PROTEIN 3 63 529 - -
Cma10g00290 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Cma10g00290 529 Gene3D Tetratricopeptide repeat domain 408 485 IPR011990 GO:0005515
Cma10g00290 529 TIGRFAM PPR: pentatricopeptide repeat domain 274 305 IPR002885 -
Cma10g00290 529 TIGRFAM PPR: pentatricopeptide repeat domain 423 455 IPR002885 -
Cma10g00290 529 TIGRFAM PPR: pentatricopeptide repeat domain 351 383 IPR002885 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma10g00290 Cma13g00908 CCT
Cma10g00290 Cma11g00217 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00290 Cma-Chr10:1286483 Cma04g02095 Cma-Chr4:14612952 4.49E-37 dispersed
Cma10g00290 Cma-Chr10:1286483 Cma11g00217 Cma-Chr11:1101592 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00290 - - cmax:111465769 843.573