Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00290 | ATGACTAGCCATTGCCCCGTTGGAGCTCTTCAAAGCTCGTCGTCCATAACAATGCTGCCATTACCGTACCTGCAACTTCGAAGGATTTTAATTCGATCTCTAGCATCGTCTTCTTCGTTATCTGCTGGTTCGTCTTCGAATTTTTTGAATGAATCTGCGAGGAGCTTTCTTTTACATCGGAATTTGACGCCTCTCATCCACCACTTCCGTCATCATGGGGCGGCAGGGAGGTTATCTTATCCTTTGCAGCTCTCACTTTCTCATTCGTTCTCCTCCGAATCCGGGGAGAATGACGTGGATCAATCATCGCAGTCACTTGCAACCGAGCTTCTCAAGGACCCTGATTTGGTTCCTCTTCCTATTACGAAGCGCCTTCAGCTTAGCTTTTCGCATGTTAAACCGAATCCAGAGTTAGTCCTCAATACGCTCAATCTCTCCTCGGAAGCTGGTCGGACGGTGTTGGGGTTTAATGACTGGTTAGTATCGAATCCTGATTTTCATCACACGGATGAGACTATCTCGTATTTTGTTGATTATTTTGGTCGTATAAAGGATTTCAATGCGATTCATGAAGTTCTTGCGAAAGGTTTAGGTATCAGTGGGGCTAAAACCCTGCGGTCGTCTATTGATCGGTTCGCTCGTGCCGGGCGACCGACAAAGCTGATCTCATTTTTTGAGACGATGGAGAAGAATTACGGGCTTAAGAGGGATAAAGAGTCACTTAGAATGGTGGTGGAGAAGCTTTGTGAAAATGGCTACGCGAGCCATGCTGTAAAGATAGTCAAAGACTTGGCGAACGAGTTTTTCCCTGACGAAGCAATATGCGATTCTCTGATCAAAGGATGGTGCGTCAATGGGAAACTAGATGAAGCAAAAAGGCTGGCGAGTGAGATGTACAGGGGAGGGTTTGAGTTAGGGACAACGGCATATAATGATCTACTTGACTGTGCTTGCAAGCTTTGTAGGAAAAAGGATCCGTTCAGACTTCACTCTGAAGCTGAGGAGATTCTGGTGGAAATGGATTATCGTGGGGTTCCACGAAATGTGGAAACCTTCAATGTGCTGATCAATAATTTGTGCAAGATCAGGAAAACTACCGATGCATTAGATTTGTTTCATCGAATGGGGGAGTGGGGATGCCATCCTAATTCTGAAACGTTCATTATTTTGACTAAAAGTCTGTATCAAGCAGCAAGGACGGGAGAGGGAGATGAAATGATTGACAGGATGAGGTCTGCAGGACATGGTGATGCACTTGATAAGAAGACTTACTATGAGTTTCTAAACACTTTGTGTGGGATCGAGAGGATTGATCATGCCTTGACTGTCTTTGAAAAAATGAAGGAGGAGGGGTGTGAACCTGGGATTAAGACATATGAGCTATTAATGGCAAATCTCTGTGCTCATAATCATCTGGACAAAGCAAATTCACTCTTTATTGAAGCTCAAAAACGGGGAGTGCCAGTTCCAAAAGCATGTCAGGTGGATCCAGGATATGTGAAGATGCCAAAGGTAAAGAACGTCGAGAAGAAGAGGGAGACGTTGCCCGAAAAAATGGCGAGGAAGAGGAGGCGACTGAAGCAAATTTGA | 1590 | 44.97 | MTSHCPVGALQSSSSITMLPLPYLQLRRILIRSLASSSSLSAGSSSNFLNESARSFLLHRNLTPLIHHFRHHGAAGRLSYPLQLSLSHSFSSESGENDVDQSSQSLATELLKDPDLVPLPITKRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNDWLVSNPDFHHTDETISYFVDYFGRIKDFNAIHEVLAKGLGISGAKTLRSSIDRFARAGRPTKLISFFETMEKNYGLKRDKESLRMVVEKLCENGYASHAVKIVKDLANEFFPDEAICDSLIKGWCVNGKLDEAKRLASEMYRGGFELGTTAYNDLLDCACKLCRKKDPFRLHSEAEEILVEMDYRGVPRNVETFNVLINNLCKIRKTTDALDLFHRMGEWGCHPNSETFIILTKSLYQAARTGEGDEMIDRMRSAGHGDALDKKTYYEFLNTLCGIERIDHALTVFEKMKEEGCEPGIKTYELLMANLCAHNHLDKANSLFIEAQKRGVPVPKACQVDPGYVKMPKVKNVEKKRETLPEKMARKRRRLKQI | 529 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1286483 | 1288144 | - | CmaCh10G002900.1 | Cma10g00290 | 301606 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00290 | 529 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 271 | 305 | IPR002885 | - | |
Cma10g00290 | 529 | Pfam | Pentatricopeptide repeat domain | 438 | 464 | IPR002885 | - | |
Cma10g00290 | 529 | Gene3D | Tetratricopeptide repeat domain | 180 | 322 | IPR011990 | GO:0005515 | |
Cma10g00290 | 529 | Gene3D | Tetratricopeptide repeat domain | 323 | 404 | IPR011990 | GO:0005515 | |
Cma10g00290 | 529 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 455 | 489 | IPR002885 | - | |
Cma10g00290 | 529 | Pfam | PPR repeat family | 348 | 394 | IPR002885 | - | |
Cma10g00290 | 529 | Pfam | PPR repeat | 277 | 302 | IPR002885 | - | |
Cma10g00290 | 529 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 420 | 454 | IPR002885 | - | |
Cma10g00290 | 529 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL | 63 | 529 | - | - | |
Cma10g00290 | 529 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 63 | 529 | - | - | |
Cma10g00290 | 529 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 348 | 382 | IPR002885 | - | |
Cma10g00290 | 529 | Gene3D | Tetratricopeptide repeat domain | 408 | 485 | IPR011990 | GO:0005515 | |
Cma10g00290 | 529 | TIGRFAM | PPR: pentatricopeptide repeat domain | 274 | 305 | IPR002885 | - | |
Cma10g00290 | 529 | TIGRFAM | PPR: pentatricopeptide repeat domain | 423 | 455 | IPR002885 | - | |
Cma10g00290 | 529 | TIGRFAM | PPR: pentatricopeptide repeat domain | 351 | 383 | IPR002885 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00290 | Cma13g00908 | CCT | |
Cma10g00290 | Cma11g00217 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00290 | Cma-Chr10:1286483 | Cma04g02095 | Cma-Chr4:14612952 | 4.49E-37 | dispersed | |
Cma10g00290 | Cma-Chr10:1286483 | Cma11g00217 | Cma-Chr11:1101592 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00290 | - | - | cmax:111465769 | 843.573 |