Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00308 ATGAAAACGTTTCTACTGCGAATCCATTTTCGGAACGCCGCCGTGCTCGTCACCTTCGCCACCGCCTTCCTCCTCCGCTTTCCGCCGTCTCTCGCCGACGATGAAGACGACTGCTTTAAGACGGGCACGTGTTCTTTTCTTTTACCTCCTCCGCCGACAGACAATAGCGACGACATCAAAAAGAAGATTATCATTGGCACATGCACTGGTTTTGGAGCCTTGCTTTTAACCTTACTTGTTCTTGGCGTCTGCTACCGATGGCGCCAGCTCCGTCGTAAAAGGTCTCACATGCTGCCATACGTGCAACAGAGCGTTCTCTCGAATCCCCCGTCCGTGGAAGAAGCTGAGAATGGAGGAACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACGAACCATTTCGACTCCAACAAAGAGCTCGGTGATGGAGGCTTTGGCACAGTCCATTATGGCTTACTCAAAGACGGGCGTGCCGTTGCTGTCAAACGGTTGTTCGAAAGCAATTTCAAGAGAGTTGAACAGTTCATGAATGAGGTCGGGATCCTCGCACGCCTGCGCCACCACAACCTCGTTTCACTTTACGGTTGTACCTCGAGCAACAGCCGTGAGCTTCTGCTTGTGTATGAATACGTTCCAAACGGTACGGTGGCTGATCACCTCCATGGAAAACTAGCAAAGCCAGGCAAGCTTCCATGGTCTACAAGATTGAAGATTGCTATAGAGACTGCAGGTGCTTTAGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATCCTCCTCGACAACCACTACTCCGTTAAAGTAGCCGATTTCGGGTTATCCCGCCTCTTCCCACTCGACGTCACGCACGTTTCAACCGCTCCACAAGGCACTCCCGGCTACGTCGACCCGGAGTACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTCTTCAGCTTCGGCGTAGTACTTGTTGAACTCATGTCCTCAATGCCTGCTGTTGACATCACAAGACATAGGCAAGAGATCAACCTGTTCAACATGGCCATCAACAAGATCCAAAGCCACGCATTACACGAGCTCGTCGACCCATCACTCGGTTTCGAATCAGACTACAAAATCAAAGACATGATAACGAGCGTCGCTGAGGTCGCATTTCAATGCCTGCAGAGCATGAAAGACGAAAGGCCAACAATGATCGAAGTTCTCGACAGTCTAAACGCCATACAGAATCGAAACAATGATGCTGTGCAGCTAAAGAATGGCTATGAATCTTCTCAAAGTTCCATGTCAGTATCTTGGGTTAGCAGTAACACCTCTACATCAACAAATTATTGA 1353 49.08 MKTFLLRIHFRNAAVLVTFATAFLLRFPPSLADDEDDCFKTGTCSFLLPPPPTDNSDDIKKKIIIGTCTGFGALLLTLLVLGVCYRWRQLRRKRSHMLPYVQQSVLSNPPSVEEAENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVHYGLLKDGRAVAVKRLFESNFKRVEQFMNEVGILARLRHHNLVSLYGCTSSNSRELLLVYEYVPNGTVADHLHGKLAKPGKLPWSTRLKIAIETAGALVYLHASEIIHRDVKTNNILLDNHYSVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELMSSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDYKIKDMITSVAEVAFQCLQSMKDERPTMIEVLDSLNAIQNRNNDAVQLKNGYESSQSSMSVSWVSSNTSTSTNY 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1393265 1396280 - CmaCh10G003080.1 Cma10g00308 301624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00308 450 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 56 429 - -
Cma10g00308 450 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Cma10g00308 450 ProSiteProfiles Protein kinase domain profile. 139 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00308 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cma10g00308 450 Gene3D Transferase(Phosphotransferase) domain 1 216 437 - -
Cma10g00308 450 SMART serkin_6 139 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00308 450 Gene3D Phosphorylase Kinase; domain 1 112 215 - -
Cma10g00308 450 SUPERFAMILY Protein kinase-like (PK-like) 124 437 IPR011009 -
Cma10g00308 450 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 56 429 IPR044652 -
Cma10g00308 450 Pfam Protein kinase domain 140 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00308 Cma13g01013 CCT
Cma10g00308 Cma13g01013 ECH
Cma10g00308 Cma11g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00308 Cma-Chr10:1393265 Cma14g01176 Cma-Chr14:9379243 2.73E-164 dispersed
Cma01g00400 Cma-Chr1:2027839 Cma10g00308 Cma-Chr10:1393265 6.66E-153 wgd
Cma10g00308 Cma-Chr10:1393265 Cma11g00286 Cma-Chr11:1425816 0 wgd
Cma10g00308 Cma-Chr10:1393265 Cma13g01011 Cma-Chr13:7785800 9.33E-157 wgd
Cma10g00308 Cma-Chr10:1393265 Cma18g01002 Cma-Chr18:8418549 1.51E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68827 PF00069 Pkinase 1.60E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00308 - - csv:101210087 644.425