Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00083 ATGCCTGTAAATTCATGGACCATCTCTTCATTTATCCTAATCCTATGCTTTTGTACTGTTTCCGCCATTAATGAACAGGGCCAAGCTCTACTCTCTTGGAAGCTAAGTTTCAAGGGATCCAACAGGGTGCTAAGTAATTGGGACCCCATCAATGAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACAAGAACAGACAAGTAGTGGAAGTAGTTTTGAGGAATGTGAACTTACACGGTGAGCTTCCATGGAATTTCTCTTCGTTCTTGTCGTTGAACAAGCTCGTCTTGTCGGGAGCCAATCTCACCGGCTCTATTCCTAAACAGATCGGTGCTCTCAGCCAGTTGAGGACCTTGGAACTCAGTGACAATGGATTGACCGGAGAAATTCCTAGTGAAATATGCGCTTTGATGAATCTTGAACAACTTTACCTGAATTCGAATGGTCTTGAAGGATCGATCCCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGGTTCTCTATGATAATCAATTGAGCGGTGAAATTCCGGTTAGTATAGGGAATTTGAGGCGGATTGAAGTGATTAGAGCTGGGGGGAACAAGAACTTACTTGGCTCTGTACCGGAAGAAATTGGTAACTGCACCAATTTGGTGATTCTTGGCCTAGCTGAAACCAGCATCTCCGGCTTTCTTCCCGCCAGTCTTGGCTTTCTCAAGAAGCTTCAGACGTTGGCAATCTATACTACTCTTCTCTCCGGTCAGATTCCTGATGAACTTGGCGACTGCACTGAGCTTCAAAATCTCTATCTCTACCAGAACTCGCTCTCTGGTTCGATTCCGATCTCATTGGGAAGGTTACGGAATCTTCAAAGTCTGCTTCTATGGCAGAACAATTTGGTCGGCGTTATACCGCCGGAGTTAGGTAGATGTGACCAGTTAACAGTCATCGACGTTTCGATTAATTCTCTGACGGGAAGAATTCCTTCAACATTTGAGAATTTAACAATGCTTGAAGAATTGCTGCTGAGTTCAAATCAATTAACAGGTGAGATTCCGAAGGAAATCGCGAAATGTTCGAGAATCACTCACATCGAGCTTGATTATAATCAGCTAACTGGTACGATTCCCTCTGAAATGGGGAATCTCGCCAATTTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCATCCACCATTTCCAATTGTCGCAATCTCGAGGCCTTGGATCTATCACTGAACGCCTTGACTGGTTCAATTCCGACGGGAATTTTTCATTTGAAGAAGCTTTCCAAGCTGTTGCTTCTCTCCAACAATCTCTCCGGCGGAATCCCGCCGGCGTTAGGTAACTGCTCTTCTCTATCTCGGTTCCGAGCGAGTAACAACAAGCTCGCGGGGGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCTTGGACCTCGGAAACAATCACCTCACTGGAGCGTTGCCTCCGGAGATTTCTGGATGCCGGAATTTGACATTCATTGATTTACATTCCAATTCTTTGACGAAATTTCTTCCAGAAGAACTCAACCAGCTTTCTTTGCTCCAGTTCGTTGATCTTTCAAATAACCTAATCGAAGGGGCTCCGATTCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCGGGGCCTATTCCGACGGAAATCGGTTCCTGCTTGAAATTACAGTTACTCGATCTAAGTTGCAATCAACTATCCGGGAACATTCCACCGAGCTTAGGCAAGATTCCTTCACTCGAAATCGGTCTCAATCTGAGCTTAAACCAACTAACCGGCAAGATTCCGCCGGAGTTTGCAAATCTAGACATGCTCGGGTCATTGGACCTCTCTTACAATCAACTCTCAGGCGACCTCCACATTCTCGCAGAACTGCAAAATCTCGTGGTTCTCAATGTATCTCACAACAATTTCTCAGGACGCGTACCTGAGACGCCATTCTTCGCGCAGCTCCCTTTGAGCGTTCTCTCCGGAAACCCGGAGTTATGCTTCGCCGGCGAGAAGTGCTACGCCGATGGCCATGGCGGCGGCGCTCCCCACACGCTAGCGGCTCGAGTGGCCATGATTGTATTGCTGTGCACGGCATGCGTACTGCTACTAGCGGCAGTTTATATCGTTCTCAAAGATAGACATTCATGTCGGGGATACTTCAATGGGTCCCGCGGCGAAGATTCAGACGACGCCTTTGACAGCGACTTGGAGCTTGGCTCTGGCTGGGAAGTGACACTATACCAGAAACTCGATCTTCCGATCTCCGAGGTAATCAGATGCTTAACGCCGGCTAATGTCATCGGCCGCGGCAAGACCGGCGTCGTGTACAGAGCCTGCATCTCATCAGGTCTAACAATCGCTGTGAAGCGATTCCGATCATCGGAAGTGTTCTCAGCGGCGGCGTTTTCATCCGAAATCGCAACATTGGCGAGGATCCGACATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAATTGCTGTTCTACGACTACTTGCCGAATGGGAATTTGGGCGCGTTGCTACACGAGGGGAATGGGCGCGTGGGGCTGGACTGGGAGAGTAGATTTAAGATAGCGTTGGGTGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCAATATTGCACCGGGACGTGAAGGCTCACAATATTCTGTTGGGGGATTGCTACGAAGCGTGTTTGGCGGACTTTGGGCTCGCTCGGTTGGTTGAAGATGGTCCGAGCGGTTCGTCTTCAACGAACCCTCAGTTTGCTGGGTCTTACGGCTATTTTGCACCTGAATATGGCTGCATGTTAAGGATCACAGACAAGAGTGACGTGTATAGCTACGGTGTCGTTTTGCTAGAGATAATAACAGGCAAAAAACCTGTAGACTCCTCATTTACAGAAGGGCAACACGTGATTCAATGGGTGAGAGACCATTTAAAGAAGAAGAAGAATCCAATTTCAATATTAGATTCGAAACTTCAAGGACGACCCGACCCGATAATCCAAGAGATCTTGCAAGCATTAGGAATCTCTTTGCTTTGCACAAGTGATCGTGCTGAAGATCGACCGACAATGAAAGACGTGACGGCTCTTTTACGTGAGATTCGACAAGACCAGCTATCGACAACAACAGATGCCGTTGACAAGCCGCCACAAAAGAATAGCAACACGACAAGCTTAGACACAAAGACATCGATTTTAACCTCATCTTCTATGGCGAATCATTTACCTTTTGCACTACCCATTCAAGAGCCGTCACATTGCTCTTATGCTTCGTTGTCCTCGTTGGGTGCATATTTTTCAGGCAACCAGTGA 3369 47.67 MPVNSWTISSFILILCFCTVSAINEQGQALLSWKLSFKGSNRVLSNWDPINETPCGWFGITCNKNRQVVEVVLRNVNLHGELPWNFSSFLSLNKLVLSGANLTGSIPKQIGALSQLRTLELSDNGLTGEIPSEICALMNLEQLYLNSNGLEGSIPAGIGNLTNLKELVLYDNQLSGEIPVSIGNLRRIEVIRAGGNKNLLGSVPEEIGNCTNLVILGLAETSISGFLPASLGFLKKLQTLAIYTTLLSGQIPDELGDCTELQNLYLYQNSLSGSIPISLGRLRNLQSLLLWQNNLVGVIPPELGRCDQLTVIDVSINSLTGRIPSTFENLTMLEELLLSSNQLTGEIPKEIAKCSRITHIELDYNQLTGTIPSEMGNLANLTLLFLWQNKLEGSIPSTISNCRNLEALDLSLNALTGSIPTGIFHLKKLSKLLLLSNNLSGGIPPALGNCSSLSRFRASNNKLAGEIPPEIGNLKNLIFLDLGNNHLTGALPPEISGCRNLTFIDLHSNSLTKFLPEELNQLSLLQFVDLSNNLIEGAPIPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPPSLGKIPSLEIGLNLSLNQLTGKIPPEFANLDMLGSLDLSYNQLSGDLHILAELQNLVVLNVSHNNFSGRVPETPFFAQLPLSVLSGNPELCFAGEKCYADGHGGGAPHTLAARVAMIVLLCTACVLLLAAVYIVLKDRHSCRGYFNGSRGEDSDDAFDSDLELGSGWEVTLYQKLDLPISEVIRCLTPANVIGRGKTGVVYRACISSGLTIAVKRFRSSEVFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDCYEACLADFGLARLVEDGPSGSSSTNPQFAGSYGYFAPEYGCMLRITDKSDVYSYGVVLLEIITGKKPVDSSFTEGQHVIQWVRDHLKKKKNPISILDSKLQGRPDPIIQEILQALGISLLCTSDRAEDRPTMKDVTALLREIRQDQLSTTTDAVDKPPQKNSNTTSLDTKTSILTSSSMANHLPFALPIQEPSHCSYASLSSLGAYFSGNQ 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 405029 408909 + CmaCh11G000830.1 Cma11g00083 302592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00083 1122 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Cma11g00083 1122 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Cma11g00083 1122 Gene3D Transferase(Phosphotransferase) domain 1 851 1077 - -
Cma11g00083 1122 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Cma11g00083 1122 SUPERFAMILY L domain-like 48 301 - -
Cma11g00083 1122 SUPERFAMILY Protein kinase-like (PK-like) 768 1050 IPR011009 -
Cma11g00083 1122 Gene3D Ribonuclease Inhibitor 357 423 IPR032675 -
Cma11g00083 1122 Gene3D Ribonuclease Inhibitor 279 356 IPR032675 -
Cma11g00083 1122 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 1071 - -
Cma11g00083 1122 SMART LRR_typ_2 161 185 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 378 402 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 330 354 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 474 498 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 113 137 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 642 675 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 282 306 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 522 545 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 403 426 IPR003591 -
Cma11g00083 1122 SMART LRR_typ_2 546 570 IPR003591 -
Cma11g00083 1122 PANTHER OS01G0170300 PROTEIN 9 1071 - -
Cma11g00083 1122 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cma11g00083 1122 SMART serkin_6 775 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00083 1122 Gene3D Phosphorylase Kinase; domain 1 763 850 - -
Cma11g00083 1122 MobiDBLite consensus disorder prediction 1059 1080 - -
Cma11g00083 1122 Gene3D Ribonuclease Inhibitor 424 689 IPR032675 -
Cma11g00083 1122 ProSiteProfiles Protein kinase domain profile. 775 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00083 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Cma11g00083 1122 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Cma11g00083 1122 Pfam Leucine rich repeat 308 367 IPR001611 GO:0005515
Cma11g00083 1122 SUPERFAMILY RNI-like 263 629 - -
Cma11g00083 1122 Pfam Protein kinase domain 779 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00083 Cma18g00183 CCT
Cma10g00113 Cma11g00083 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01031 Cma-Chr9:5293924 Cma11g00083 Cma-Chr11:405029 0 dispersed
Cma11g00083 Cma-Chr11:405029 Cma17g00118 Cma-Chr17:586539 0 dispersed
Cma10g00826 Cma-Chr10:3848795 Cma11g00083 Cma-Chr11:405029 8.27E-73 transposed
Cma10g00113 Cma-Chr10:477560 Cma11g00083 Cma-Chr11:405029 0 wgd
Cma11g00083 Cma-Chr11:405029 Cma18g00183 Cma-Chr18:938258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68868 PF00069 Pkinase 6.60E-38 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00083 - - csv:101206847 1870.9