Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00217 ATGCCGCCATTACCGTATCTGCATCTCAGAAGGTTTTTTATTCGGTCTCTTTCATCATCTTCGTATTTATCTGCCTCGTCGTCCTCAAGTTCTTTGAATGAAGCTTCGAAGAGCGTTGTTTTACGTCGAGATTTGACCTCTGTTTTCCACCATTTCCGTCGTCGAGGACCGGCATTGGGGTGTTCTTATCTATCCCAACTCTCACTTTCTCATTCGTTCTTTTCCGAGTCCGGTGAGAATGATGTGGATCAATCATCGCAGTCGCTTGCGGCCGAGCTTCTTAAAGACCCCGATTTGGATCCTCTTCCCATTACGAAGCGCCTTCAGCTTTGCTTTTCGCATGTTAAACCAAATCCGGAGTTAATTCTCAATACGCTCAATTTCTCCTCGGAAGCTGGCCGAACTGTGTTAGGGTTTAACGAGTGGTTAATATCGAATCCTGATTTTCATCACACGGATGAGACTATATCGTATTTCGTCGATTATTTTGGTCGTAGGAAGGATTTCAATTCGATTCACGAAGTTCTTGCGAAGGGCTCAGGGATCAGTGGGGCTAAAACCCTGCGGTCGACCATTGATCGGTTCGCTCGTGCTGGACGACCCACAAAGTTGTTATCATTTTTCGAGACAATGGAGAAGAATTATGGATTTAAGAGGGATAAAGAGTCGATTAGGATGGTGGTGGAGAAGCTTTGTGAAAACGGCTACGCGAGCCATGCTGAGAAGATGGTCAAAGACTTGGCGCACGAATTTTTCCCAGACGAAGCAATTTGCGATACTCTCATCAAAGGATGGTGCGTCAATGAGAAACTCGATGAAGCGAAAAGGCTGGCAGGTGAGATGTATAGGGGAGGGTTTGAGTTAGGGACAACGGCCTACAATGCTCTGCTTGACTGTGTTTGCAAGCTTTGTAGGAAAAAGGATCCGTTTAAGCTTCAATCTGAGGCTGAGGAAATTCTGGTGGAAATGGATTGTCGGGGGGTTCCAAGAAATGTGGAAACTTTCAATGTACTGATTAATAATCTGTGCAAGATTAGGAAAACTACGGATGCACTAAATTTGTTTCATCGAATGGGGGAGTGGGGATGTCATCCTAACGCTGAAACGTTCCTTATTTTGATCAAAAGTTTGTATCAAGCGGCCAGGACGGGAGAGGGGGATGAAATGATTGACAGGATGAGGTCTGCGGGATATGCTGATGCACTTGATAAGAAGGCTTATTATGAGTTTCTGAAGATTTTGTGTGGGATCGAGAGGATTGATCATGCCCTGATTGTTTTTGCGAAGATGAAGAAGGATGGGTGTGAGCCTGGCATTAAGACATATGATCTATTGATGGGAAAACTCTGTGCCCATAATCGTCTGGACAGAGCAAATTCACTCTTTAATGAAGCTCAGAAACGGGGAGTTCCAGTCACTCCAAAAGCTTATCAGGTTGAGCCAAGGTATGCAAAGAAGCCAAAGGTAAAGAAGGTTGAGAAGAAGAGGGAGACATTGCCAGAGAAAATGGCAAGGAAGAGGAGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAGCCAAAAAAAACAATGCGTAGAGCATTTTGA 1590 44.59 MPPLPYLHLRRFFIRSLSSSSYLSASSSSSSLNEASKSVVLRRDLTSVFHHFRRRGPALGCSYLSQLSLSHSFFSESGENDVDQSSQSLAAELLKDPDLDPLPITKRLQLCFSHVKPNPELILNTLNFSSEAGRTVLGFNEWLISNPDFHHTDETISYFVDYFGRRKDFNSIHEVLAKGSGISGAKTLRSTIDRFARAGRPTKLLSFFETMEKNYGFKRDKESIRMVVEKLCENGYASHAEKMVKDLAHEFFPDEAICDTLIKGWCVNEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFKLQSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRKTTDALNLFHRMGEWGCHPNAETFLILIKSLYQAARTGEGDEMIDRMRSAGYADALDKKAYYEFLKILCGIERIDHALIVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDRANSLFNEAQKRGVPVTPKAYQVEPRYAKKPKVKKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKKTMRRAF 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1101592 1103181 + CmaCh11G002170.1 Cma11g00217 302726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00217 529 TIGRFAM PPR: pentatricopeptide repeat domain 441 472 IPR002885 -
Cma11g00217 529 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Cma11g00217 529 Pfam PPR repeat 260 285 IPR002885 -
Cma11g00217 529 Gene3D Tetratricopeptide repeat domain 308 399 IPR011990 GO:0005515
Cma11g00217 529 Gene3D Tetratricopeptide repeat domain 400 523 IPR011990 GO:0005515
Cma11g00217 529 Pfam Pentatricopeptide repeat domain 421 447 IPR002885 -
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Cma11g00217 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 45 528 - -
Cma11g00217 529 Gene3D Tetratricopeptide repeat domain 154 307 IPR011990 GO:0005515
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cma11g00217 529 PANTHER ATPASE EXPRESSION PROTEIN 3 45 528 - -
Cma11g00217 529 Pfam PPR repeat family 331 377 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00217 Cma13g00908 CCT
Cma10g00290 Cma11g00217 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00205 Cma-Chr10:911131 Cma11g00217 Cma-Chr11:1101592 1.67E-40 dispersed
Cma11g00217 Cma-Chr11:1101592 Cma04g02095 Cma-Chr4:14612952 1.00E-36 dispersed
Cma10g00290 Cma-Chr10:1286483 Cma11g00217 Cma-Chr11:1101592 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00217 - - cmax:111465769 1008.44