Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00286 ATGAAGATCTTTCTCCTGCCGACTCATTTTCAGACCGCCACCGCACTTTTCACCTTCGCCGCCGCCTTCCTCCTCCTATTTCCGCCGTGTCTCGGCGAACACGATAGCAATGACGAATGCCGAGGGCCCTACTCGACGCCATCGTGTGTTCATCCCTCTCCGCCTGCGTCTGGTAATGGCAACGCAAGGAGAAACAGCATTATCATTGGTACGTGCATTGGCTTTGGAGCCTTGCTTTTGAGCATAATTGTTCTATGCATCTGCTACCGACGACGCCAGCTCCGTCGTAAACGTTCTCACGCCGTACCGTATGCCCAACGGAGCATTCCCTTGAATCCGTCAAATCCCCATTCTGTGGAAGAGCTTGAGAAGGGAGATTCATACTTGGGCGTTCATCTTTTCTCTTATAAAGAACTTGAAGAAGCCACCAACCATTTCGACTCCAATAAAGAGCTTGGAGATGGAGGCTTTGGCACGGTTTATTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAAAGGTTGTTTGAAAGCAATTTCAGGAGAGTTGAGCAGTTCATGAATGAGGTGGAGATCCTAGCCCGTCTGCGCCATCGTAACCTCGTTTCGCTTTACGGTTGCACCTCACGGAACAGCCGTGAGCTTCTGCTTGTGTATGAATACGTCCCTAATGGCACGGTGGCCGATAATCTCCATGGAAAGCTAGCAAAGCCTGGAAAGCTTCCATGGTGTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAACTTTTGTGTTAAAGTAGCCGATTTCGGATTGTCCCGTCTCTTCCCGCTCGATGTCACACACGTTTCAACCGCGCCACAAGGCACTCCTGGCTATGTCGATCCGGAGTACCATCAGTGCTATCAACTCTCTGATAAAAGCGATGTCTTTAGCTTTGGTGTGGTATTAGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAACCTATTCAACATGGCTATCAACAAGATCCAAAGCCACGCATTGAATGAACTTGTCGACCCTTCACTCGGTTTCGAAACAGACTACAAGATCCAAAACATGATCACCGGAGTAGCTGAGTTGGCATTTCGATGCCTACAGAGCATGAAAGATGAGAGGCCAACAATGATGGAAGTTCTCGACACTCTGAACATCATACAGAAACTGAACGTCGAGAAAGGGAATGATCGCGATACCGACATTTCTGCTAAGGACGACGCCGTGCTACTGAAGAATGGCTATGGATCTTCTCCAAGCTCCCTGTCTGTATCTTGGGTTAGCAGTAACACCTCCACAGCAACGAATGAAACCGTCAGTGCCTAA 1428 48.25 MKIFLLPTHFQTATALFTFAAAFLLLFPPCLGEHDSNDECRGPYSTPSCVHPSPPASGNGNARRNSIIIGTCIGFGALLLSIIVLCICYRRRQLRRKRSHAVPYAQRSIPLNPSNPHSVEELEKGDSYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFESNFRRVEQFMNEVEILARLRHRNLVSLYGCTSRNSRELLLVYEYVPNGTVADNLHGKLAKPGKLPWCTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQSHALNELVDPSLGFETDYKIQNMITGVAELAFRCLQSMKDERPTMMEVLDTLNIIQKLNVEKGNDRDTDISAKDDAVLLKNGYGSSPSSLSVSWVSSNTSTATNETVSA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1425816 1429058 - CmaCh11G002860.1 Cma11g00286 302795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00286 475 Gene3D Transferase(Phosphotransferase) domain 1 223 433 - -
Cma11g00286 475 Gene3D Phosphorylase Kinase; domain 1 118 222 - -
Cma11g00286 475 Pfam Protein kinase domain 147 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00286 475 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 37 462 - -
Cma11g00286 475 SMART serkin_6 146 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00286 475 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Cma11g00286 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Cma11g00286 475 ProSiteProfiles Protein kinase domain profile. 146 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00286 475 SUPERFAMILY Protein kinase-like (PK-like) 127 416 IPR011009 -
Cma11g00286 475 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 37 462 IPR044652 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00286 Cma13g01013 CCT
Cma11g00286 Cma13g01013 ECH
Cma10g00308 Cma11g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00286 Cma-Chr11:1425816 Cma14g01176 Cma-Chr14:9379243 6.68E-168 dispersed
Cma10g00308 Cma-Chr10:1393265 Cma11g00286 Cma-Chr11:1425816 0 wgd
Cma11g00286 Cma-Chr11:1425816 Cma13g01011 Cma-Chr13:7785800 7.82E-165 wgd
Cma11g00286 Cma-Chr11:1425816 Cma18g01002 Cma-Chr18:8418549 4.73E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68874 PF00069 Pkinase 9.20E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00286 - - csv:101210087 724.546