Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01659 ATGGATTTCCTCTCCCGAAAGCTCCTCCCCGACGACGACGACGACGACGACTTCAAGGAACTCTGCCTTAAAACCTGCCCCAATAACTCTCCCGATAATTGCCCTTCCGATTGCCTCGAAAAATGCCCAAATCTTTGTTCCCGTGGCCCGATTTCAATCCCGCCGCCCTATTACGACAAATCGCCTCACAAACTCCCCAATTGGGTCACAGCCACCATCGCCCTTCTCTCTTTCACCTTTCTCCTCGTCCTCTGTTACACCGTCTACGTCCGTTTCTACTCCGGCCGCCGCAGACGCCGCCAACGCCCTGACCCCCCACCGCCCACCACCCACCAGGAGGAGTTTCTCGATGAAGAACATGGCCCTGTTTTGGATCACCCCATCTGGTATATCCGCACCATCGGCCTCCCACCGGCTGTCATCAACGCCATCGCTATCTGCAAATTCAAAACCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTTGAAGAGGATGAGACTCTTAGACTTTTGCCCAAGTGTAGCCACGCTTTTCATCTCCCCTGTATCGACACTTGGCTTCAATCCCACACGAACTGCCCCATGTGCCGCGCTCCAGTGGTAGCTCAATCCACTGCCGTGACCCCACCGCCGCCGCCGCCTCCGCCTCCTCTGGTCACATCTGAAGAAACCCAGATGAGGGATTTACAGATGGAAGTGGGAAATGGATCCAATTCCGGCGAATCTTCTCTAAGAAACGAAGAACAACAAGAACAAGATGAAATTCAGGCAGTGAGAAGATCAGTTTCTTTAGATTCATTATCAGCTCTTCGAATCATCTCTGATCTTGCTGAAATTGGTATGAGAAATGGGAATGATTTGAAGAAGAAATCATGCCAAGAGAGAGTGAATTCTTCAGCTGCTATGAACAGGTCAGTTTCTTGCAGTGGCGAATTTGTGATGAGAAATTCGACACAGAGTAGTAGTTGA 987 50.86 MDFLSRKLLPDDDDDDDFKELCLKTCPNNSPDNCPSDCLEKCPNLCSRGPISIPPPYYDKSPHKLPNWVTATIALLSFTFLLVLCYTVYVRFYSGRRRRRQRPDPPPPTTHQEEFLDEEHGPVLDHPIWYIRTIGLPPAVINAIAICKFKTGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLQSHTNCPMCRAPVVAQSTAVTPPPPPPPPPLVTSEETQMRDLQMEVGNGSNSGESSLRNEEQQEQDEIQAVRRSVSLDSLSALRIISDLAEIGMRNGNDLKKKSCQERVNSSAAMNRSVSCSGEFVMRNSTQSSS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10914692 10915678 + CmaCh11G016590.1 Cma11g01659 304168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01659 328 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Cma11g01659 328 MobiDBLite consensus disorder prediction 238 261 - -
Cma11g01659 328 CDD RING-H2_PA-TM-RING 160 203 - -
Cma11g01659 328 MobiDBLite consensus disorder prediction 99 117 - -
Cma11g01659 328 Pfam Ring finger domain 160 203 IPR001841 -
Cma11g01659 328 MobiDBLite consensus disorder prediction 98 117 - -
Cma11g01659 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 212 IPR013083 -
Cma11g01659 328 SMART ring_2 161 202 IPR001841 -
Cma11g01659 328 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 319 IPR044675 -
Cma11g01659 328 SUPERFAMILY RING/U-box 155 209 - -
Cma11g01659 328 PANTHER RING-H2 FINGER PROTEIN ATL54 23 319 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01659 Cma19g00468 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01659 Cma-Chr11:10914692 Cma14g01924 Cma-Chr14:13565063 3.99E-34 dispersed
Cma11g01659 Cma-Chr11:10914692 Cma19g00468 Cma-Chr19:5612484 1.45E-113 wgd
Cma11g01659 Cma-Chr11:10914692 Cma19g00231 Cma-Chr19:1586009 1.27E-46 wgd
Cma11g01659 Cma-Chr11:10914692 Cma03g00822 Cma-Chr3:6253749 9.43E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01659 - - cmo:103495376 394.43