Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00148 ATGGCTGCTTTGATGGATTTCTATGGTTGCAGAGATCTTCAGTCGTATCCAGTTGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTCTTCTTTCCTTCCTTCCTTTTCTCCTTCTTCTTCATCTTTCGATCCTGATTTCTCCTCTTCTTTCTCTTCAATCCAAACGGAGTCCACTTCTTATCCTTCCGATTGCTCGCCGCCGGTGGCCTATTCATATTCCGACGGGTTTTCGGCTAACAACCTTCACGGTTTGGAGCAATCGGCTTCAATCGGACTCAATTACTTGACTCCCTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTTCAGACTCAGATCCAGCCGGTTTGGGGACATGTTAACAACCAGCAAGAGCTAACGAAAAACCAGATGAACGGCGTGAATTTGCTTGGCCCGAAGGCGATTCCGATGAAACATGTGGGATCTCCACCGAAATCGACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTACCGAGGAACCGTACTCGGTTATGGCTAGGCACCTTCGACACCGCTGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCCTACAAGCTCCGAGGCGATTTTGCCAGGCTTAATTTCCCTCAGCTGAAGCACCACGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTCCACTCCGCGGTCGATGCTAAGCTCGATGCCATATGCCAAACTTTGGCTGAGTCGCAAAAACAGGGGAAATCGAACCGATCTGCCTCCTCGAGGAAGTCGAAATCATCATCGATTTCTTCCACGGTCGGATCGGAGTCTCAGGCACCGACGGTGATCGATTCTGACGACGATCTGAAGGCTGGCGAGGTCAGGTCAAGTGGATCAGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCAGCCGAGAGCGACGAGTCAGCAGGATCTTCGCCTTTATCAGATCTGACGTTCCCCGATCCGACAGATTCGCCATGGGAACAGCCGTCAGAAAGCTCTATGTTGCAGAAATATCCGTCTGAAATCGATTGGGCTTCGATTTTCACTTCGTGA 1116 50.99 MAALMDFYGCRDLQSYPVGGELMEALEPFMKAASSSSSFLPSFSPSSSSFDPDFSSSFSSIQTESTSYPSDCSPPVAYSYSDGFSANNLHGLEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGHVNNQQELTKNQMNGVNLLGPKAIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPQLKHHGSSVGGDFGEYKPLHSAVDAKLDAICQTLAESQKQGKSNRSASSRKSKSSSISSTVGSESQAPTVIDSDDDLKAGEVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESSMLQKYPSEIDWASIFTS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 648339 649454 + CmaCh12G001480.1 Cma12g00148 304638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00148 371 MobiDBLite consensus disorder prediction 257 359 - -
Cma12g00148 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 368 - -
Cma12g00148 371 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700|GO:0006355
Cma12g00148 371 Gene3D AP2/ERF domain 164 222 IPR036955 GO:0003700|GO:0006355
Cma12g00148 371 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Cma12g00148 371 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700|GO:0006355
Cma12g00148 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 368 - -
Cma12g00148 371 MobiDBLite consensus disorder prediction 257 291 - -
Cma12g00148 371 CDD AP2 163 221 IPR001471 GO:0003700|GO:0006355
Cma12g00148 371 MobiDBLite consensus disorder prediction 310 359 - -
Cma12g00148 371 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Cma12g00148 371 SMART rav1_2 164 227 IPR001471 GO:0003700|GO:0006355
Cma12g00148 371 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00489 Cma12g00148 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00534 Cma-Chr7:2311762 Cma12g00148 Cma-Chr12:648339 1.86E-78 dispersed
Cma09g00654 Cma-Chr9:3113076 Cma12g00148 Cma-Chr12:648339 5.48E-102 dispersed
Cma12g00148 Cma-Chr12:648339 Cma17g00096 Cma-Chr17:469795 1.73E-33 dispersed
Cma20g00645 Cma-Chr20:2991403 Cma12g00148 Cma-Chr12:648339 6.90E-24 dispersed
Cma12g00148 Cma-Chr12:648339 Cma05g00489 Cma-Chr5:2317976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35955 PF00847 AP2 5.00E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00148 K09286 - csv:101222833 521.931