Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00148 | ATGGCTGCTTTGATGGATTTCTATGGTTGCAGAGATCTTCAGTCGTATCCAGTTGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTCTTCTTTCCTTCCTTCCTTTTCTCCTTCTTCTTCATCTTTCGATCCTGATTTCTCCTCTTCTTTCTCTTCAATCCAAACGGAGTCCACTTCTTATCCTTCCGATTGCTCGCCGCCGGTGGCCTATTCATATTCCGACGGGTTTTCGGCTAACAACCTTCACGGTTTGGAGCAATCGGCTTCAATCGGACTCAATTACTTGACTCCCTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTTCAGACTCAGATCCAGCCGGTTTGGGGACATGTTAACAACCAGCAAGAGCTAACGAAAAACCAGATGAACGGCGTGAATTTGCTTGGCCCGAAGGCGATTCCGATGAAACATGTGGGATCTCCACCGAAATCGACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTACCGAGGAACCGTACTCGGTTATGGCTAGGCACCTTCGACACCGCTGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCCTACAAGCTCCGAGGCGATTTTGCCAGGCTTAATTTCCCTCAGCTGAAGCACCACGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTCCACTCCGCGGTCGATGCTAAGCTCGATGCCATATGCCAAACTTTGGCTGAGTCGCAAAAACAGGGGAAATCGAACCGATCTGCCTCCTCGAGGAAGTCGAAATCATCATCGATTTCTTCCACGGTCGGATCGGAGTCTCAGGCACCGACGGTGATCGATTCTGACGACGATCTGAAGGCTGGCGAGGTCAGGTCAAGTGGATCAGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCAGCCGAGAGCGACGAGTCAGCAGGATCTTCGCCTTTATCAGATCTGACGTTCCCCGATCCGACAGATTCGCCATGGGAACAGCCGTCAGAAAGCTCTATGTTGCAGAAATATCCGTCTGAAATCGATTGGGCTTCGATTTTCACTTCGTGA | 1116 | 50.99 | MAALMDFYGCRDLQSYPVGGELMEALEPFMKAASSSSSFLPSFSPSSSSFDPDFSSSFSSIQTESTSYPSDCSPPVAYSYSDGFSANNLHGLEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGHVNNQQELTKNQMNGVNLLGPKAIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPQLKHHGSSVGGDFGEYKPLHSAVDAKLDAICQTLAESQKQGKSNRSASSRKSKSSSISSTVGSESQAPTVIDSDDDLKAGEVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESSMLQKYPSEIDWASIFTS | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 648339 | 649454 | + | CmaCh12G001480.1 | Cma12g00148 | 304638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00148 | 371 | MobiDBLite | consensus disorder prediction | 257 | 359 | - | - | |
Cma12g00148 | 371 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 1 | 368 | - | - | |
Cma12g00148 | 371 | ProSiteProfiles | AP2/ERF domain profile. | 164 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00148 | 371 | Gene3D | AP2/ERF domain | 164 | 222 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g00148 | 371 | PRINTS | Ethylene responsive element binding protein signature | 165 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00148 | 371 | PRINTS | Ethylene responsive element binding protein signature | 187 | 203 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00148 | 371 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 1 | 368 | - | - | |
Cma12g00148 | 371 | MobiDBLite | consensus disorder prediction | 257 | 291 | - | - | |
Cma12g00148 | 371 | CDD | AP2 | 163 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00148 | 371 | MobiDBLite | consensus disorder prediction | 310 | 359 | - | - | |
Cma12g00148 | 371 | SUPERFAMILY | DNA-binding domain | 164 | 222 | IPR016177 | GO:0003677 | |
Cma12g00148 | 371 | SMART | rav1_2 | 164 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00148 | 371 | Pfam | AP2 domain | 165 | 213 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00489 | Cma12g00148 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00534 | Cma-Chr7:2311762 | Cma12g00148 | Cma-Chr12:648339 | 1.86E-78 | dispersed | |
Cma09g00654 | Cma-Chr9:3113076 | Cma12g00148 | Cma-Chr12:648339 | 5.48E-102 | dispersed | |
Cma12g00148 | Cma-Chr12:648339 | Cma17g00096 | Cma-Chr17:469795 | 1.73E-33 | dispersed | |
Cma20g00645 | Cma-Chr20:2991403 | Cma12g00148 | Cma-Chr12:648339 | 6.90E-24 | dispersed | |
Cma12g00148 | Cma-Chr12:648339 | Cma05g00489 | Cma-Chr5:2317976 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35955 | PF00847 | AP2 | 5.00E-15 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00148 | K09286 | - | csv:101222833 | 521.931 |