Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00246 ATGCCTGAGCTCCGTAGAAAGCCACGGAGGAGCCGGGTATGCGAAGACCCAATCACGATTGTGCACCAAACACCCGTTAAGCTAACTGTCAGAACACGCCACCGTGGGAAACCTGCTAAGCGCGGCGGAGAGAAGTGTATTAAGGAGGGGAACGACGCGATCGACGCCGATGGTGAGAGGGATATTGTGAACCCTGGAATCGGTCTTGAAACTAGCAAAGGTGAAGTTGGGAAGGACAAAGAGCTACTGGAGGTTGGTGTTAAAGCCATGGATGAGTTCGATAGTGGCGGACGGAACGGCGATAAAGGTCCTAAAGCTGAGGATGAAAGCACGGCCGCTCCTCTTCCGGAGAAGGTTCAGGTTGGCGGCTCTCCATTATATAAAGTAGAAAGAAAATTAGGAAAAGGAGGTTTTGGACAGGTGTATGTGGGTCGACGCATGGGTCCCACGAGCTTGAATGAAAGATCTGGCTCTGGAGCTGTAGAGATAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCCTATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGCCATGGTGTGCCAAGAGTTCATTACAAGGGTCGGCAAGGTGACTACTATGTCATGGTTATGGACATGCTTGGACCTAGTCTTTGGGATGTCTGGAATAACAATGCTCACACGATGTCGATTGAAATGGTTGCATGCATCGCAATCGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTACGTGCATGGTGACGTGAAGCCTGAAAACTTTTTGCTAGGCCCTCCTGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACGAAGTGGCGTGATAGTTCAACTGGTCAACATGTTGAGTATGATCAACGGCCAGACGTTTTCCGAGGAACAGTTCGGTATGCTAGTGTTCATGCGCATCTTGGCAGAACTGCTAGTCGGAGAGATGATTTGGAATCGCTTGCTTACACTCTTGTTTTTCTTCTTCGTGGTCGGCTTCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGTCTACTTCCTCTGAAACATTGTGCTGTTTTTGCCCACAGCCTTTTAGGCAGTTTGTTGAATATGTTGTGAATTTGAAATTTGACGAAGAGCCGAACTATGCAAGATATATCTCCCTCTTTGATGGGATCGTCGGTCCAAATCCAGATATCCATCCAATTAACACAGATGGTGCACAGAAACTTATTTTTCAGGTTGGGCAGAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGACGAACAACCAAAGAAGAAGGTTCGAATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAAACCAATGAAGCAAAGATATCACTATAACGTTGCTGATATGAGGCTCTCTCAGCACATTGAGAAAGGAAACGAAGATGGTTTATTTATTAGTTGCGTTGCTTCATGTTCGAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTACTGCTCAAGTTTACGAACTCTCGCCATGCTTTCTTCACAAGGACTGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTAGTAATGTCCAAAGGGACTCAGTACCTTCAGCAATCTTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCCACTGCCGGCAGTAGATGGGCAATTGTCATGTCACGCGGTGCAGGATTTTCTGACCAGGTGGTGGAACTAGATTTCCTATATCCTAGTGAAGGTGTTCACCGCAGGTGGGATAGTGGTTACCGCATCACATCAACGGCTGCAACTTTGGACCAGGCTGCTCTTGTTTTGAGTGTGCCTAGGAGAAAGCCTACCGATGAAACTCAAGAAACGCTTCGGACATCTGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAACCTTTATATCGCATCTATTTGCTATGGCCGAACTGTTTCATGA 2085 45.95 MPELRRKPRRSRVCEDPITIVHQTPVKLTVRTRHRGKPAKRGGEKCIKEGNDAIDADGERDIVNPGIGLETSKGEVGKDKELLEVGVKAMDEFDSGGRNGDKGPKAEDESTAAPLPEKVQVGGSPLYKVERKLGKGGFGQVYVGRRMGPTSLNERSGSGAVEIALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMSTSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIHPINTDGAQKLIFQVGQKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARKPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPCFLHKDWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGVHRRWDSGYRITSTAATLDQAALVLSVPRRKPTDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1233868 1238847 + CmaCh12G002460.1 Cma12g00246 304736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00246 694 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 96 668 - -
Cma12g00246 694 SMART serkin_6 127 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00246 694 PANTHER CASEIN KINASE-RELATED 96 668 - -
Cma12g00246 694 MobiDBLite consensus disorder prediction 31 52 - -
Cma12g00246 694 SUPERFAMILY Protein kinase-like (PK-like) 127 409 IPR011009 -
Cma12g00246 694 Pfam Protein kinase domain 127 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00246 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cma12g00246 694 ProSitePatterns Protein kinases ATP-binding region signature. 133 166 IPR017441 GO:0005524
Cma12g00246 694 MobiDBLite consensus disorder prediction 94 112 - -
Cma12g00246 694 MobiDBLite consensus disorder prediction 90 118 - -
Cma12g00246 694 Gene3D Transferase(Phosphotransferase) domain 1 95 452 - -
Cma12g00246 694 ProSiteProfiles Protein kinase domain profile. 127 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00246 694 CDD STKc_CK1 127 403 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00116 Cma12g00246 CCT
Cma01g01777 Cma12g00246 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01212 Cma-Chr2:7161826 Cma12g00246 Cma-Chr12:1233868 0 dispersed
Cma08g00734 Cma-Chr8:4410534 Cma12g00246 Cma-Chr12:1233868 0 dispersed
Cma12g00246 Cma-Chr12:1233868 Cma17g00772 Cma-Chr17:6203719 0 dispersed
Cma12g00246 Cma-Chr12:1233868 Cma05g00588 Cma-Chr5:2913179 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68943 PF00069 Pkinase 8.70E-16 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00246 - - csv:101218249 1310.43