Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00403 ATGGGATTTATTCAAACCCATTTTCTCTCTCCTTCTCTTTTGTTTCTCTCTCTTCTTTTGATCATCTTCTTTACAGGCGTTTCTGGAGCTCGATTTACACTTATAAACAGATGCGATTACACTGTTTGGCCGGGAATTCTCGGCAACACACAATTGGAATTTACTGGATTCGAGCTTTCTCCGGGGGCGGCGCGTTCACTCCACGCGCCTCCAGGGTGGTCCGGCAGATTCTGGGGTCGGACCGGCTGTTTGTTCGACCCAGCCACCAGTCAGGGAAGCTGCCGTACTGCTGACTGTGGATCAAATCAAATGGAATGCAATGGCGCCGGAGCAACGCCGCCGGCTACTCTGGCTGAGTTCACAATCGGCGCTAGTGCCGGCGCGCAGGACTTTTATGACGTCAGCTTGGTTGACGGCTACAACATTCCGATGGTCATTGAGGCCACCGACGGTAACGGCGTGTGTCAGTTGACTGGGTGTGCGGCGGATTTGAACCGGCGTTGCCCTGTGGAGCTGCGTGCCGGCGATGGGAAGGCGTGCAAGAGTGCGTGTGAGGCGTTTGGGAACCCGGAATATTGCTGTAGCGGCGCGTATAATTCACCCGCCGCCTGTAAGCCGTCGGTGTACTCGGAAATTTTCAAATCAGCTTGCCCCAAATCATATAGCTATGCCTTTGATGATGCAACAAGCACTTTTACTTGCAGTGGTGCTGACTACACCATTACATTCTGCCCTTCCTCAACCAGCCAAAAACCAGAAAGAGACGCATCAAGTAGAGAAGGGCCATCGGTATTCAACGGTTCATGGCTGCCGGACTTCATCACCGGCGGCGGATCATCAAAAACAATGTCATCGTTGTTCTTTACGATGAAGATTAAAATGGGCCAATTGCTATGA 897 51.95 MGFIQTHFLSPSLLFLSLLLIIFFTGVSGARFTLINRCDYTVWPGILGNTQLEFTGFELSPGAARSLHAPPGWSGRFWGRTGCLFDPATSQGSCRTADCGSNQMECNGAGATPPATLAEFTIGASAGAQDFYDVSLVDGYNIPMVIEATDGNGVCQLTGCAADLNRRCPVELRAGDGKACKSACEAFGNPEYCCSGAYNSPAACKPSVYSEIFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSTSQKPERDASSREGPSVFNGSWLPDFITGGGSSKTMSSLFFTMKIKMGQLL 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2089523 2092185 - CmaCh12G004030.1 Cma12g00403 304893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00403 298 Gene3D Thaumatin 30 245 IPR037176 -
Cma12g00403 298 ProSiteProfiles Thaumatin family profile. 29 245 IPR001938 -
Cma12g00403 298 CDD TLP-PA 32 244 - -
Cma12g00403 298 Pfam Thaumatin family 36 245 IPR001938 -
Cma12g00403 298 PIRSF PR5 3 282 IPR001938 -
Cma12g00403 298 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 262 - -
Cma12g00403 298 PANTHER OS03G0233200 PROTEIN 10 262 IPR001938 -
Cma12g00403 298 SUPERFAMILY Osmotin, thaumatin-like protein 31 246 IPR037176 -
Cma12g00403 298 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cma12g00403 298 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Cma12g00403 298 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Cma12g00403 298 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Cma12g00403 298 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Cma12g00403 298 SMART tha2 32 245 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00098 Cma12g00403 CCT
Cma09g00098 Cma12g00403 ECH
Cma05g00313 Cma12g00403 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00313 Cma-Chr5:1359232 Cma12g00403 Cma-Chr12:2089523 9.46E-159 dispersed
Cma12g00403 Cma-Chr12:2089523 Cma20g00763 Cma-Chr20:3600503 4.13E-110 dispersed
Cma12g00403 Cma-Chr12:2089523 Cma12g00404 Cma-Chr12:2094081 2.62E-88 tandem
Cma12g00403 Cma-Chr12:2089523 Cma03g00680 Cma-Chr3:5628886 2.61E-117 wgd
Cma12g00403 Cma-Chr12:2089523 Cma05g00312 Cma-Chr5:1353680 5.14E-88 wgd
Cma12g00403 Cma-Chr12:2089523 Cma07g00422 Cma-Chr7:1812385 1.73E-117 wgd
Cma12g00403 Cma-Chr12:2089523 Cma09g00098 Cma-Chr9:437138 4.56E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00403 - - cmax:111496283 580.867