Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00404 ATGGAGGCCCGAATTTCATTCCTGTTGGGTGTTTCGATTCTGATGCTTGTGCTGCCAGGCGGGTTTCCGACAAGCTTTACTTTTGTGAACAAATGTGGATTCACAGTCTGGCCGGGCATTCTGTCGAACGGTGGCGTTCCGCCGCTTTCCACCACTGGTTTCTCTCTCCAGTCTGGAGAATCCAAGACGCTGCCTGCGCCGACGTCTTGGGGCGGCCGGTTCTGGGGCCGAACACTCTGTTCCGAAGATTCCACCGGGAAATTCTCCTGCGGTACTGGCGATTGCGGCTCCGACAAACTTGAGTGCGCCGGAAATGGAGCGATGCCTCCGGCCACTCTGGCGGAATTTACACTCGACGGCTCCGGCGGCCTTGATTTCTTCGACGTCAGTCTGGTGGACGGTTACAATCTTCCAATGATGGTAGTGCCACAAGGCGGCTCCGGTGACAATTGCACTAGCACCGGCTGCGTTGTGGATCTAAACGATGCGTGTCCTTCAGAGCTGCGCGTGATGAGCTCTGACGGAAGAGAGAGCGTCGCGTGTAAAAGCGCGTGTGGTGCCTTCAACCAACCGCAGTATTGTTGTACAGGCGCGTACCAAACACCTGATACTTGTCAGCCGTCGATGTACTCTCAGATCTTTAAGAAAGCGTGCCCACGCGCTTATAGCTACGCGTATGATGACAAGACGAGTACCTTCACATGCGCCAGTGCCGATTATGTTATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCATCCGATGCACAGAACTCACCGGCGACGGCGAACCGATCTTCCAGCGGCGATGTTGGTATGGTGTACGAAGCCGGATCCCTGATCCAAACCGACGCAGCGCCGCCGCGTATGGCCGGAATATCAGCGGTTGGTACGGTGGCGATTTGGTGGTTATGGCAGTTCTACTTCTGA 933 55.52 MEARISFLLGVSILMLVLPGGFPTSFTFVNKCGFTVWPGILSNGGVPPLSTTGFSLQSGESKTLPAPTSWGGRFWGRTLCSEDSTGKFSCGTGDCGSDKLECAGNGAMPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGDNCTSTGCVVDLNDACPSELRVMSSDGRESVACKSACGAFNQPQYCCTGAYQTPDTCQPSMYSQIFKKACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSDAQNSPATANRSSSGDVGMVYEAGSLIQTDAAPPRMAGISAVGTVAIWWLWQFYF 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2094081 2096025 - CmaCh12G004040.1 Cma12g00404 304894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00404 310 MobiDBLite consensus disorder prediction 249 270 - -
Cma12g00404 310 SMART tha2 26 246 IPR001938 -
Cma12g00404 310 MobiDBLite consensus disorder prediction 249 271 - -
Cma12g00404 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Cma12g00404 310 CDD TLP-PA 25 245 - -
Cma12g00404 310 Pfam Thaumatin family 30 246 IPR001938 -
Cma12g00404 310 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cma12g00404 310 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cma12g00404 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cma12g00404 310 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cma12g00404 310 PANTHER OS03G0233200 PROTEIN 16 270 IPR001938 -
Cma12g00404 310 PANTHER BNAA02G17480D PROTEIN 16 270 - -
Cma12g00404 310 Gene3D Thaumatin 24 246 IPR037176 -
Cma12g00404 310 ProSiteProfiles Thaumatin family profile. 26 246 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01018 Cma12g00404 CCT
Cma01g01018 Cma12g00404 ECH
Cma05g00312 Cma12g00404 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00312 Cma-Chr5:1353680 Cma12g00404 Cma-Chr12:2094081 0 dispersed
Cma07g00423 Cma-Chr7:1816089 Cma12g00404 Cma-Chr12:2094081 1.25E-101 dispersed
Cma09g00098 Cma-Chr9:437138 Cma12g00404 Cma-Chr12:2094081 3.21E-144 dispersed
Cma12g00404 Cma-Chr12:2094081 Cma20g00764 Cma-Chr20:3604467 2.98E-109 dispersed
Cma19g00269 Cma-Chr19:1951305 Cma12g00404 Cma-Chr12:2094081 2.78E-79 dispersed
Cma19g00270 Cma-Chr19:1953505 Cma12g00404 Cma-Chr12:2094081 2.78E-79 dispersed
Cma12g00403 Cma-Chr12:2089523 Cma12g00404 Cma-Chr12:2094081 2.62E-88 tandem
Cma01g01978 Cma-Chr1:12735370 Cma12g00404 Cma-Chr12:2094081 3.92E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00404 - - csv:101204094 570.466