Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00423 ATGGAGGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCCAAGGAGGGTGGGTTTGACTCAGATGATGACGAGCCTATTGGATCTCTGCTGAAGTTGAAGAGATCACGAAACTCCATGAAGAACAAGGTAGGTGTAGATTTTGGCGGTGAAAGAGACAAGATGGTTGACAAGAAAGTAGCGAAGTTGCCGGTGCAAGAGGAGGACTTTGGGGGGATGGACGATACTTTAGCAAGTTTCAGAAAGAAGTTGAGGCGTCCAAAAAAGGTTAGCGGGTTTGGAACATCTAAGGAACAGAGTTCTGGTTTTAGCCAGGCAGAATCATCAGATCCGATATTGAACTCATGCAGAGGACGAGGGGATTTAGACTCGAGTTTTAGACCAGAAAATAGTGAATCAATGGGCCGTGAAGGGTCTGATCCATCTTCAAAGATTGATGCAGAAATGGTGTGTGAAACACCTGATTTTGAATTAAAACACATGGAGACAGTTATCTCTAGGAGGAGAACTTCTAATTGCTCTTTTGACGAACAGTTGGATGATTCATTGTCAGCATTTGCCCAAAAGATTCAATCTGGTTCAACTAGGAAATCATTGGTATCGACGACATGTAAACCGGAATGCAAGGCTGAGACTTCAGAAGATAAATTGAGTAACTTTTCTAGAGTTTTATCTGGGGATCAAGAAACCTACCATGTAGTGAGTTCTAGTTCTTCTGCTAAGCTGGCACAGGTTGTCAAAAAATCAGATTCTGAACTTACTAGGCCATATTTAATATCCTGTTCCTGTTACAGTAGAGAAAATCGTAATCCTGGTCTAGGACAATGCCAAGGGGTTGAAGGAGACCGAGAAGAAATTCAATGCGGTGTAAATAATTATGATAATGCTGACATCAAACCATGCATACCACGCATAGTTGCTGATGAAGATGGCAAAAACTTTAGTCATATTCAATTTGGGGACAATTTCCAGTCGCTGGAAAGGAAGGTCTCCTGTGAAACCAAGAATGGACTAAAACATTGTTCATGTGGCGATACGATGGGGCTAGGTGAAAGTCATCTTAATGAAGATATGCACAATTCTTGTCATGCCCTAGAACAGGCAAATGAAAACAATGGCCTTTGTGGGGGTGTTTCCTATGGAGATTTTTGTGACGTGGTGGCCCATGAGTCCACAGTCGCTTTGTCTAAAACAACTTCAGGTGTAGATTGCGAAGGAAAAGACAGATCACTGGCTATACATTATGATGAATTGCCCAACTCCGCCAATGTTTGTGAAAGTTATTCCAAAGGATTCTGTAAATCTACTAAAAAATTAAAGATTTCTAATCCTTCTTCCGAAGGAACTACACTCTCCAATCTTGAATTGTTGGCAGCCTTCGAGTCTATGAAAGCGGATAAAACTTGCTGTGACTCTGGTAATTTAGATACTGGTACTGACGAGCCAAATACTAAAGTTGGTTCTGTGCAGAATGAAAATGCTCTGATCTCTCATAGGATTTCAGATTCAACTGCCGTCTGCCCTGTTGGGAATTGCAGTATGATATCAGATAGTCAACCAGCCAAGGCTTCTGTAGAGGTAGATGGTCCAAATAATAATATACCTGCTGATAAAGAGGCCAAGGTATCTTCTCCTGGGTCTTTGACTCCAGATGATAATGACATTGAGGATGTAATATCTGCTCCTGGAAGTGAAAAAGATTTAAAGCTTTCAGTTTTGCAACGTGTTGTGCGCAAGACAAAGAAGCCTAGACGTGATGACATGGCTTATGAAGAAGATATTGATTGGGAGGTTTTGCTTAATGAGCGTGCAGTTGATAGTGACTATTCTTTTAGATCAAGAAGGGATTCTACATCAACAACTTCTACGGAGGCGGAAACTGGGGGTAGAGCTGCTGTGTCTGCAGGGCTTAAGGCTCATGCCGTTAGTCTACTTGAGAAGATTAAATTTAAGGAAGTGCTTAAGAGAAAAGGTGGGCTTCAAGAGTACTTAGCGTGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACTCGCATTTTACATCTCGTTGACTGTGGGATCACTGATACTCCCTCTATGGATGAACCAACGCATTTTTCCCTTATTAGGGAGATCTATGCGTTTCTTAATCTTCGTGGTTATATAAATGCGGGAATTGCTTCTGAAAAAGCCAAGTCAGAATCTGGCTTCAAGTATGATTGTGAACGGGGAGAAAAGAAAGTTGGAGACATTAGTGTTGCTTCAGCTGCTGATTCTGAGGAAGGCATTTCTGCCATGGTTAAAAATTCTGATGCTTCTAATGCCAAGAACAGTGTTTCAGCTGGCTGTGAACTACCAGAAGACACTGAAGGAAGAGACCTTGTGACTGCAAATAATCAGGAGTTGCAAAAATTTGCGGAACACGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCATGATCCTTCACCGGGAAAATTGGTAGGTATTGATGTTCCAGGTGAAGCTGCCGCCCAGTTAGCTCATCATTCAAGTAATGGTTGGCACCCAATTGGCTCCTCTAATGAGTGTGTAGGGGGTGATGAAAAACAGCAGAGTAATTCAGAAGTCAGAAAAAAGGTAATTGTTATTGGAGCCGGCCCTGCTGGCTTGACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCAACGTACTTGAAGCCAGGAATAGATTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCGGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTGTTAAATAGTGACTGTCCTCTCTATGATATCGTTTCATGCAAAAAAGTTCCGGTAGACATTGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGACCATGTCTCTTGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGATTGGGAATGGATGTTCGTTCTGAGGAAGAAGTTTTGAGTCCCTTTGAGAGGCGAGTTATGAACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTATGCTGAAGAAAGTATCGCTTCCTCATTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATCAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCAATATTCACCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCACTGATATTGGGTCGAATGTAAATCAATGTGCGAAGGTAAAAGTTTCCACAACCAATGGATGTGAGTTTCTTGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGTTTGAAAGCAGAATCTATTAAGTTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGTTTTGGAGTTCTTAACAAAATTGTTCTTGAATTTCCACAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCTGTTCTCATTGCGCTAGTGGTTGGTCAGGCGGCTGTGGAGAGACAATACATGAGCTCTTCCGATAACATAAGCCATGCATTAATGGTTCTTCGCAAACTTTTTGGAGAAGCTGTGGTGCCTGACCCAGTTGCATCTGTGGTAACTGATTGGGGAAGAGATCCGTTTAGTTATGGTGCTTACTCCTATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCCAGGCCTGTTGAAAACTGTTTGTTTTTTGCTGGTGAAGCTACATGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGTCTAAGAGAGGCTGTACGCATGATTGATGTATTGAGCACTGGTTATGATTATACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACGTAATTACACGACTCGATGATGTTAAGATTTCTGATGCTCTCTACAAAAATTCTATGGATTGTGCCAAAGAAGCCTTACTTCAGGACTTGTTTTCTAGTGCGAAAACGACTGCAGGGAGATTGCATGTCGCAAAAGAGTTGTTGAAACTCTCTGTTGAGACATTGAAGTCCTTCGCAGGGACCAAAGAAGGTCTGACAGTTCTCAACTCATGGATTCTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTGCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGCGCCATTGCGAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAAGCTGCTCATGGGGGGTTAAAACTCTCAAAGTCGGTTTCTACTGTAGAATCATTGAAGAGGAAATCCAATAAAGATTCTTCTGGGAGACCTCCTCTGCATGCAAACAACAGCACACTGGATAGTAGAGGCAATTTGCAGACTTCTACAATTCACTTGCCTTCTGATGTCAATACGAAAAATGATAATAGCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTAGGAAAGCAGGATGCAGAAATGGAAGACAACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCAGCACTTGCAGCTGCGAAGGCGTACGCATCTTCTGAAGCTAAGTGTGCATTGCAGCTCCCTAAAATCCCTTCCTTTCACAAATTTGCTCGAAAGGAGCATTGCGCACAAATGGATGAGTGCGAGTCTAAAAGGAAATTGTCTGGCAGTGTGCTAGGAAGACAGGATTGTATATCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTCGAAAGTTCACGAATGTCTGCAGATAACCTTTCGCAAAGGAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCCGGTGAAAGTGCCCCTGTGGATAGCAGTATATACACGAAAGCATGGGTTGATACAGCTGGCAGTGTTGGAATGAAAGATTATCATGCAATTGAGAGATGGCGATCTCAAGCAGCTGCAGCTCATGTAAACGATGAGGAGGATTCAAACACTGCTGGGAATAAACCCACTTGGAATAGCGATCAATTAGCGAATGAAAGCTCGATATCACAAGTGACGATCAACAAGGAGCCTTTACGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCCGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGACAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCCTTTGTTGATAAATTAATAGAGAGGCATATGGCTACGAAGCCACAGAACATAACTTTGATCTCGTCCCTTATGGTAGCCCGATGCGATCGAATTGACCGACTCGGTGACTGGTTCTTCCTAGTTTTTGCTTCACTTTATTGCCTGTCGTGCTAG 5808 42.98 MEGDNKKSGFRKRTKPKEGGFDSDDDEPIGSLLKLKRSRNSMKNKVGVDFGGERDKMVDKKVAKLPVQEEDFGGMDDTLASFRKKLRRPKKVSGFGTSKEQSSGFSQAESSDPILNSCRGRGDLDSSFRPENSESMGREGSDPSSKIDAEMVCETPDFELKHMETVISRRRTSNCSFDEQLDDSLSAFAQKIQSGSTRKSLVSTTCKPECKAETSEDKLSNFSRVLSGDQETYHVVSSSSSAKLAQVVKKSDSELTRPYLISCSCYSRENRNPGLGQCQGVEGDREEIQCGVNNYDNADIKPCIPRIVADEDGKNFSHIQFGDNFQSLERKVSCETKNGLKHCSCGDTMGLGESHLNEDMHNSCHALEQANENNGLCGGVSYGDFCDVVAHESTVALSKTTSGVDCEGKDRSLAIHYDELPNSANVCESYSKGFCKSTKKLKISNPSSEGTTLSNLELLAAFESMKADKTCCDSGNLDTGTDEPNTKVGSVQNENALISHRISDSTAVCPVGNCSMISDSQPAKASVEVDGPNNNIPADKEAKVSSPGSLTPDDNDIEDVISAPGSEKDLKLSVLQRVVRKTKKPRRDDMAYEEDIDWEVLLNERAVDSDYSFRSRRDSTSTTSTEAETGGRAAVSAGLKAHAVSLLEKIKFKEVLKRKGGLQEYLACRNQILGLWCKDVTRILHLVDCGITDTPSMDEPTHFSLIREIYAFLNLRGYINAGIASEKAKSESGFKYDCERGEKKVGDISVASAADSEEGISAMVKNSDASNAKNSVSAGCELPEDTEGRDLVTANNQELQKFAEHEQELVHDLEYGTHDPSPGKLVGIDVPGEAAAQLAHHSSNGWHPIGSSNECVGGDEKQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVNVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIVSCKKVPVDIDEALEAEYNSLLDDMVLLVAQRGEHAMTMSLEEGLEYALKRRRMARLGMDVRSEEEVLSPFERRVMNWHLANLEYGCAAMLKKVSLPHWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNIHLNHVVADISYSTTDIGSNVNQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAESIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPQVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNISHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSTGYDYTAEVEAMEAAQRQSECENDEVGDVITRLDDVKISDALYKNSMDCAKEALLQDLFSSAKTTAGRLHVAKELLKLSVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAAHGGLKLSKSVSTVESLKRKSNKDSSGRPPLHANNSTLDSRGNLQTSTIHLPSDVNTKNDNSKQLKLEMENSSKSDISSSRSRGSLGKQDAEMEDNNIAMTEEEEAAFAAAEAARAAALAAAKAYASSEAKCALQLPKIPSFHKFARKEHCAQMDECESKRKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRSQAAAAHVNDEEDSNTAGNKPTWNSDQLANESSISQVTINKEPLRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKTIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPQNITLISSLMVARCDRIDRLGDWFFLVFASLYCLSC 1935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2188465 2199277 + CmaCh12G004230.1 Cma12g00423 304913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00423 1935 SUPERFAMILY FAD-linked reductases, C-terminal domain 1170 1281 - -
Cma12g00423 1935 Pfam SWIRM domain 640 720 IPR007526 GO:0005515
Cma12g00423 1935 ProSiteProfiles SWIRM domain profile. 630 730 IPR007526 GO:0005515
Cma12g00423 1935 Gene3D - 959 1287 - -
Cma12g00423 1935 Gene3D - 630 733 IPR036388 -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1 33 - -
Cma12g00423 1935 Pfam Flavin containing amine oxidoreductase 880 1332 IPR002937 GO:0016491
Cma12g00423 1935 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 574 1899 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1577 1592 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1 50 - -
Cma12g00423 1935 SUPERFAMILY Homeodomain-like 632 726 IPR009057 -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 95 114 - -
Cma12g00423 1935 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1425 1509 IPR035441 -
Cma12g00423 1935 PANTHER FLAVIN MONOAMINE OXIDASE 574 1899 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 86 146 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1771 1797 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 525 554 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1522 1597 - -
Cma12g00423 1935 SUPERFAMILY FAD/NAD(P)-binding domain 869 1334 IPR036188 -
Cma12g00423 1935 Gene3D - 872 1330 IPR036188 -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1533 1566 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1782 1797 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00288 Cma12g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01326 Cma-Chr1:9464935 Cma12g00423 Cma-Chr12:2188465 3.35E-68 dispersed
Cma09g00891 Cma-Chr9:4389345 Cma12g00423 Cma-Chr12:2188465 2.37E-94 dispersed
Cma12g00423 Cma-Chr12:2188465 Cma15g00505 Cma-Chr15:2286918 7.58E-91 dispersed
Cma20g00737 Cma-Chr20:3450444 Cma12g00423 Cma-Chr12:2188465 1.78E-06 dispersed
Cma05g01395 Cma-Chr5:10423965 Cma12g00423 Cma-Chr12:2188465 1.09E-30 transposed
Cma12g01290 Cma-Chr12:10004002 Cma12g00423 Cma-Chr12:2188465 2.17E-23 transposed
Cma12g00423 Cma-Chr12:2188465 Cma05g00288 Cma-Chr5:1236640 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35980 PF01593 Amino_oxidase 1.50E-99 CL0063 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00423 - - bhj:120075972 3016.87