Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00502 ATGTCTCCCCAAACAGCTTCTAATTGCTACACCACCAACTACATCATCGGCGAATGCAGGATCTCAACATCCGCCACAAGAACCGCCATCCTTATCGGAACCCTCATCGGCGGAGCCACCGTACTGGTTACTGTATGCTTCTTCTGCTACTTCATTCGCCGTCGTTCCAATCTCAAATCCACACACATCCAAAAAATCACCAAACGTCGCCTCTCAGAAGCCACCGCCGGAAAATCCCCCATCCATATCTACACCTACAAAGAGATCCAAAAAGCCACCCAAAACTTCTCCAACGACCACCGCCTCGGAACCGGCGCCTACGCCACTGTCTACGCCGGAAAATTACGCAGCGATAAATGGGTAGCTATCAAACGCCTAAAAAATCAAGACCCTGACACCATCCAACAAGTCCTTAACGAAATCAGTCTCATCTCCTCCGTCAGCCACCCGAACCTCGTCCGCCTCCTCGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTATGAATTCATGCCCAACGGCACTCTGTCACAACATTTACAAAAACAGAGAGGCACCGGTCTCCCCTGGCCCGTCCGTTTAGACATCGCCGTCGAAACCGCCGATGCAATTGCCCATCTCCACTCTGCAATTAACCCACCGATCTTCCACAGAGACATAAAATCCAGCAATATTCTACTCGATCAAAATCTGAAGTCAAAAGTGGCGGATTTTGGGCTTTCAAGATTGGGGATGGCGGAAATTTCCCACATCTCGACGGCGCCGCAGGGGACGCCGGGGTATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTCGTTCTGGTAGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGCCCGAAAAACGAGATCAATTTGGCAGCTCTGGCCGCCGATAAAATTGGGAGTGGGCGGCTGAGGGAGATTGTGGATCCGTTGATTGAGATAGATAAAGATGAATGGAGGATTTCTTCGGTGGAAAAAGTGGGGGAGGTGGCGTTTAGATGCTTGGCGTTTCATAGGGATATGAGGCCGTCGATGGTGGAGGTGGCGGCGGAGCTGGATGAGATACGGCGGCGCCGGTGGGAAGAAGCGGGGTTGAAGTGCAAGGAAATGGGTTTAGTAGTTGAAAGTGAGAGCTCGAAATCGAGCCATGGAGGCGGAGATTACTTTTCTCGAGCCTCTGTTGAAGATTCATGGCAGAGTGAACAGAGCTCACCGTCCTCGAGTAGTTTGTTAAATCACGTCATTTTATAA 1299 51.35 MSPQTASNCYTTNYIIGECRISTSATRTAILIGTLIGGATVLVTVCFFCYFIRRRSNLKSTHIQKITKRRLSEATAGKSPIHIYTYKEIQKATQNFSNDHRLGTGAYATVYAGKLRSDKWVAIKRLKNQDPDTIQQVLNEISLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWPVRLDIAVETADAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKNEINLAALAADKIGSGRLREIVDPLIEIDKDEWRISSVEKVGEVAFRCLAFHRDMRPSMVEVAAELDEIRRRRWEEAGLKCKEMGLVVESESSKSSHGGGDYFSRASVEDSWQSEQSSPSSSSLLNHVIL 432
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2602510 2603808 - CmaCh12G005020.1 Cma12g00502 304992
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00502 432 Gene3D Phosphorylase Kinase; domain 1 56 171 - -
Cma12g00502 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cma12g00502 432 SMART serkin_6 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00502 432 SUPERFAMILY Protein kinase-like (PK-like) 75 368 IPR011009 -
Cma12g00502 432 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 24 385 - -
Cma12g00502 432 ProSitePatterns Protein kinases ATP-binding region signature. 102 124 IPR017441 GO:0005524
Cma12g00502 432 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 385 IPR045274 GO:0007166
Cma12g00502 432 Gene3D Transferase(Phosphotransferase) domain 1 172 394 - -
Cma12g00502 432 Pfam Protein kinase domain 97 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00502 432 ProSiteProfiles Protein kinase domain profile. 96 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma05g00216 Cma12g00502 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01010 Cma-Chr7:5236317 Cma12g00502 Cma-Chr12:2602510 4.15E-87 dispersed
Cma12g00502 Cma-Chr12:2602510 Cma15g00054 Cma-Chr15:282771 1.27E-97 dispersed
Cma18g01002 Cma-Chr18:8418549 Cma12g00502 Cma-Chr12:2602510 2.88E-86 dispersed
Cma12g00502 Cma-Chr12:2602510 Cma03g01017 Cma-Chr3:7079778 3.72E-158 wgd
Cma12g00502 Cma-Chr12:2602510 Cma05g00216 Cma-Chr5:911920 0 wgd
Cma12g00502 Cma-Chr12:2602510 Cma07g00735 Cma-Chr7:3250356 1.08E-170 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68950 PF00069 Pkinase 3.30E-41 CL0016 Cma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00502 - - cmos:111454075 791.571