Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00502 | ATGTCTCCCCAAACAGCTTCTAATTGCTACACCACCAACTACATCATCGGCGAATGCAGGATCTCAACATCCGCCACAAGAACCGCCATCCTTATCGGAACCCTCATCGGCGGAGCCACCGTACTGGTTACTGTATGCTTCTTCTGCTACTTCATTCGCCGTCGTTCCAATCTCAAATCCACACACATCCAAAAAATCACCAAACGTCGCCTCTCAGAAGCCACCGCCGGAAAATCCCCCATCCATATCTACACCTACAAAGAGATCCAAAAAGCCACCCAAAACTTCTCCAACGACCACCGCCTCGGAACCGGCGCCTACGCCACTGTCTACGCCGGAAAATTACGCAGCGATAAATGGGTAGCTATCAAACGCCTAAAAAATCAAGACCCTGACACCATCCAACAAGTCCTTAACGAAATCAGTCTCATCTCCTCCGTCAGCCACCCGAACCTCGTCCGCCTCCTCGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTATGAATTCATGCCCAACGGCACTCTGTCACAACATTTACAAAAACAGAGAGGCACCGGTCTCCCCTGGCCCGTCCGTTTAGACATCGCCGTCGAAACCGCCGATGCAATTGCCCATCTCCACTCTGCAATTAACCCACCGATCTTCCACAGAGACATAAAATCCAGCAATATTCTACTCGATCAAAATCTGAAGTCAAAAGTGGCGGATTTTGGGCTTTCAAGATTGGGGATGGCGGAAATTTCCCACATCTCGACGGCGCCGCAGGGGACGCCGGGGTATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTCGTTCTGGTAGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGCCCGAAAAACGAGATCAATTTGGCAGCTCTGGCCGCCGATAAAATTGGGAGTGGGCGGCTGAGGGAGATTGTGGATCCGTTGATTGAGATAGATAAAGATGAATGGAGGATTTCTTCGGTGGAAAAAGTGGGGGAGGTGGCGTTTAGATGCTTGGCGTTTCATAGGGATATGAGGCCGTCGATGGTGGAGGTGGCGGCGGAGCTGGATGAGATACGGCGGCGCCGGTGGGAAGAAGCGGGGTTGAAGTGCAAGGAAATGGGTTTAGTAGTTGAAAGTGAGAGCTCGAAATCGAGCCATGGAGGCGGAGATTACTTTTCTCGAGCCTCTGTTGAAGATTCATGGCAGAGTGAACAGAGCTCACCGTCCTCGAGTAGTTTGTTAAATCACGTCATTTTATAA | 1299 | 51.35 | MSPQTASNCYTTNYIIGECRISTSATRTAILIGTLIGGATVLVTVCFFCYFIRRRSNLKSTHIQKITKRRLSEATAGKSPIHIYTYKEIQKATQNFSNDHRLGTGAYATVYAGKLRSDKWVAIKRLKNQDPDTIQQVLNEISLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWPVRLDIAVETADAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKNEINLAALAADKIGSGRLREIVDPLIEIDKDEWRISSVEKVGEVAFRCLAFHRDMRPSMVEVAAELDEIRRRRWEEAGLKCKEMGLVVESESSKSSHGGGDYFSRASVEDSWQSEQSSPSSSSLLNHVIL | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2602510 | 2603808 | - | CmaCh12G005020.1 | Cma12g00502 | 304992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00502 | 432 | Gene3D | Phosphorylase Kinase; domain 1 | 56 | 171 | - | - | |
Cma12g00502 | 432 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 216 | 228 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g00502 | 432 | SMART | serkin_6 | 96 | 377 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00502 | 432 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 368 | IPR011009 | - | |
Cma12g00502 | 432 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 | 24 | 385 | - | - | |
Cma12g00502 | 432 | ProSitePatterns | Protein kinases ATP-binding region signature. | 102 | 124 | IPR017441 | GO:0005524 | |
Cma12g00502 | 432 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 24 | 385 | IPR045274 | GO:0007166 | |
Cma12g00502 | 432 | Gene3D | Transferase(Phosphotransferase) domain 1 | 172 | 394 | - | - | |
Cma12g00502 | 432 | Pfam | Protein kinase domain | 97 | 364 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00502 | 432 | ProSiteProfiles | Protein kinase domain profile. | 96 | 371 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00216 | Cma12g00502 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g01010 | Cma-Chr7:5236317 | Cma12g00502 | Cma-Chr12:2602510 | 4.15E-87 | dispersed | |
Cma12g00502 | Cma-Chr12:2602510 | Cma15g00054 | Cma-Chr15:282771 | 1.27E-97 | dispersed | |
Cma18g01002 | Cma-Chr18:8418549 | Cma12g00502 | Cma-Chr12:2602510 | 2.88E-86 | dispersed | |
Cma12g00502 | Cma-Chr12:2602510 | Cma03g01017 | Cma-Chr3:7079778 | 3.72E-158 | wgd | |
Cma12g00502 | Cma-Chr12:2602510 | Cma05g00216 | Cma-Chr5:911920 | 0 | wgd | |
Cma12g00502 | Cma-Chr12:2602510 | Cma07g00735 | Cma-Chr7:3250356 | 1.08E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68950 | PF00069 | Pkinase | 3.30E-41 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00502 | - | - | cmos:111454075 | 791.571 |