Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00567 | ATGGCGCCGCCGTATGCGCTTGATGCTCTGTTCTGCCCGGAGGAGCACTGGGAGGACCAAGAACAAGAACAACAACAGCAACAACGTTACACTAATTTAACGAACGAGGATCTGTTCTGGGAAAACGATGAACTAATTTCTCTTCTTGCTCGTGAGAAGCCTAATGAACTCTTTCAAATCATTCAGACTAACTCTTCTCTCGCCGCCGCTCGACGAGCCGCCGTCGAGTGGATGCTGAATGTCATTACCCACTACTCCTTCTCTGCTCTCACGGCTGTTCTCGCCGTCGATTACTTCGACAAGTTCTTGTCGTTTTTTCATTTTCAAACAGATAAGCCATGGATGTTTCACCTCGCTGCTGTTGCTTGTCTCTCTCTTGCTGCCAAAGTGGAGGAGACCCATGTGCCTCTTTTGTTGGACCTTCAAGTTGAAGTCAGTAGATATCTGTTTGAAGCCAAGACAATCAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCCTTTGTGGATCATATGTCAAGAAGGCTTGGATTCAAGGATCATATCTGCCGGGAAATTCATTGGTGGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCAATGGAGCCCCACCTCGACGTTGAATACGATTACCAGCTTCTTAACATCCTCAAACTCGACAAGGGGAATGTGGAGGAATGCTGTAAACTAATCTCGGATGCATCGAGAAGAAACAGCCACCAATTTAAAAAACGGAAATTTGGGTCGGTTCCGAGCAGTCCAAACGGTGTTATGGACGTGTCATTCAGCTCCGACAGCTCAAACGACTCGTGGTCGGTGGCTTCGTCGGTTTCTTCCTCGCCGGATCCATTAACAAAGAAGAACAGAGCATTGGATCAATGTTTCGTCGACATTCCTCGCTAG | 999 | 46.75 | MAPPYALDALFCPEEHWEDQEQEQQQQQRYTNLTNEDLFWENDELISLLAREKPNELFQIIQTNSSLAAARRAAVEWMLNVITHYSFSALTAVLAVDYFDKFLSFFHFQTDKPWMFHLAAVACLSLAAKVEETHVPLLLDLQVEVSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDHMSRRLGFKDHICREIHWWCERTILSVILESDFMSFLPSVMATATMLHVFKAMEPHLDVEYDYQLLNILKLDKGNVEECCKLISDASRRNSHQFKKRKFGSVPSSPNGVMDVSFSSDSSNDSWSVASSVSSSPDPLTKKNRALDQCFVDIPR | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2965391 | 2967041 | + | CmaCh12G005670.1 | Cma12g00567 | 305057 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00567 | 332 | Pfam | Cyclin, C-terminal domain | 173 | 297 | IPR004367 | - | |
| Cma12g00567 | 332 | SMART | Cyclin_C_2 | 173 | 298 | IPR004367 | - | |
| Cma12g00567 | 332 | MobiDBLite | consensus disorder prediction | 290 | 318 | - | - | |
| Cma12g00567 | 332 | Gene3D | - | 172 | 261 | - | - | |
| Cma12g00567 | 332 | SMART | cyclin_7 | 76 | 164 | IPR013763 | - | |
| Cma12g00567 | 332 | CDD | CYCLIN | 75 | 163 | IPR013763 | - | |
| Cma12g00567 | 332 | Gene3D | - | 56 | 171 | - | - | |
| Cma12g00567 | 332 | SUPERFAMILY | Cyclin-like | 41 | 171 | IPR036915 | - | |
| Cma12g00567 | 332 | PANTHER | CYCLINS | 20 | 321 | IPR039361 | - | |
| Cma12g00567 | 332 | Pfam | Cyclin, N-terminal domain | 60 | 171 | IPR006671 | - | |
| Cma12g00567 | 332 | SUPERFAMILY | Cyclin-like | 155 | 277 | IPR036915 | - | |
| Cma12g00567 | 332 | ProSitePatterns | Cyclins signature. | 71 | 102 | IPR006671 | - | |
| Cma12g00567 | 332 | PANTHER | CYCLIN D3.1 PROTEIN | 20 | 321 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01813 | Cma12g00567 | CCT | |
| Cma09g00261 | Cma12g00567 | CCT | |
| Cma01g01813 | Cma12g00567 | ECH | |
| Cma09g00261 | Cma12g00567 | ECH | |
| Cma05g00163 | Cma12g00567 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma12g00567 | Cma-Chr12:2965391 | Cma16g00347 | Cma-Chr16:1632612 | 2.33E-100 | dispersed | |
| Cma01g01813 | Cma-Chr1:12047797 | Cma12g00567 | Cma-Chr12:2965391 | 1.23E-87 | wgd | |
| Cma11g01728 | Cma-Chr11:11487243 | Cma12g00567 | Cma-Chr12:2965391 | 5.02E-67 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma19g00585 | Cma-Chr19:6507822 | 4.97E-77 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma04g00476 | Cma-Chr4:2429635 | 8.17E-91 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma05g00163 | Cma-Chr5:698112 | 2.65E-165 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma07g00683 | Cma-Chr7:3002281 | 6.18E-87 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma09g00261 | Cma-Chr9:1092895 | 2.24E-102 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00567 | K14505 | - | csv:101205442 | 449.129 |