Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00596 ATGGAAGCTTTGGGAGCTTTTACTGATGGGGAATGGGATTCTTTCACTGCCATCTTCTCATCCCTTCAAGAACTCGATCAATCCCTCACCTCCACTGAGCTTCCATTGCCCAACAATGGCGCCTCTGAGCTTCCTAATAATACCTGGTTCTATTCCTTAGACGCTTTTGATCCCAATTTCCAGAGCTCTGTTCAACAGGACATGAGCTGTAGTAGCTGCAGTCCTGTTTGGATGGACGAAATACAAAAGTGTCTCGCCGCCACCGCTGAAGCTTGCGACCATGGCAGCCAGCCGCCACAGCTTGTCGATGGAAATGAACCGATTGCGACGAAAAGAAAAGACAAAAACAGAGAGCTTTCTTCTAATCAGAAGAAGAAAACTCGAATCTCCGGCGATGGGCAAAAGAAGAAAACCCAGAAGAAAACAGAGGAAATAGTTGAGGATGCAGGGGTATCAGAAGGACAGAGCTCGAGTTCAGAAGAGGAGAGTCACGGCGGCTCAGCCACCACCTCCGACGGCGGCATGAACGGAAAGGGCAGAGCCAGCAGAGGGTCGGCCACAGATCCACAAAGCCTGTACGCCAGAAAACGAAGAGAGAGAATCAATGAGCGTTTAAAAATGTTACAGAAACTCGTTCCCAATGGAACCAAGGTTGATATCAGCACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTCTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGATCTATGGATGTTTGCTCCTTTGGCTTACAAGGGAATGGACCTTGGCCTTCACCAGAGCCTCTCTCCGTTTCTATCAAATTGA 816 47.92 MEALGAFTDGEWDSFTAIFSSLQELDQSLTSTELPLPNNGASELPNNTWFYSLDAFDPNFQSSVQQDMSCSSCSPVWMDEIQKCLAATAEACDHGSQPPQLVDGNEPIATKRKDKNRELSSNQKKKTRISGDGQKKKTQKKTEEIVEDAGVSEGQSSSSEEESHGGSATTSDGGMNGKGRASRGSATDPQSLYARKRRERINERLKMLQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMFAPLAYKGMDLGLHQSLSPFLSN 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3109902 3111378 + CmaCh12G005960.1 Cma12g00596 305086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00596 271 MobiDBLite consensus disorder prediction 151 176 - -
Cma12g00596 271 Gene3D - 185 242 IPR036638 GO:0046983
Cma12g00596 271 MobiDBLite consensus disorder prediction 107 148 - -
Cma12g00596 271 MobiDBLite consensus disorder prediction 93 196 - -
Cma12g00596 271 Pfam Helix-loop-helix DNA-binding domain 195 235 IPR011598 GO:0046983
Cma12g00596 271 SMART finulus 191 240 IPR011598 GO:0046983
Cma12g00596 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 246 IPR036638 GO:0046983
Cma12g00596 271 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 267 - -
Cma12g00596 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Cma12g00596 271 PANTHER TRANSCRIPTION FACTOR BHLH54 60 267 - -
Cma12g00596 271 CDD bHLH_AtIND_like 186 248 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00285 Cma12g00596 CCT
Cma09g00285 Cma12g00596 ECH
Cma05g00143 Cma12g00596 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00596 Cma-Chr12:3109902 Cma16g00324 Cma-Chr16:1521773 3.78E-55 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma12g00596 Cma-Chr12:3109902 3.54E-49 wgd
Cma12g00596 Cma-Chr12:3109902 Cma19g00554 Cma-Chr19:6318015 2.15E-45 wgd
Cma12g00596 Cma-Chr12:3109902 Cma04g00451 Cma-Chr4:2305604 9.17E-51 wgd
Cma12g00596 Cma-Chr12:3109902 Cma05g00143 Cma-Chr5:640612 3.62E-100 wgd
Cma12g00596 Cma-Chr12:3109902 Cma09g00285 Cma-Chr9:1167219 1.81E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35999 PF00010 HLH 4.20E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00596 - - cpep:111785098 450.669