Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00634 ATGGCAGAGCTCTGGATTCAAGAAGCCATTGTAATGGAAAATGGATTCTTGATCCGAGAAATGAAGTCCATCGGATTGCATGGTTTCATCATATGGTTCGGATTCAAGCAGTCCATAAGAGCCAAAACAAACAGATGGGGTGTTTGGGTACTGACAAGACCTGGCAGGAACAGAAGTTTCAACAAAGAGAATCCAGATATTTGGATTACGATGACTGCAGTGGATCAGAAAATGAGCGGTCGTGAGCAGGACAAAGGAGATGGCACAGAGAGAAGGACATGGGCCATCAGCCTTAAACAAAGAGTGAGTGGTTCTCCAAACTTGCACCTTTTTATGGAGATACAAAAGCCAAGTTCTTTGAATCTTCTTCTCTTGCTTCTTTGGGATGTCTCAGATCTCCTATGGGGAGTTTTCGTCTACAATGCTTCAAAGTTGGAGAGTGACTTGAGGAATGCTCTGGTGAATATGGCCAGTACAAATTCTGTCATTGTAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCCCTGCTACTGATGCAGATGATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCAATGTTCACTGCCCCACAACGGAACGATTTGGTGGATGTTTCCGGAGGTTGTTTGAATCTCTCTAGTAATGCTGAGTTTCAAGATCAGCTAGCCGGAGCAATTCCTATTGCTTCTGTTTCTCCAGTGGATGCAAAAGATTCAGCATTTTCAGCCCCTCAGTTCCAGCAATTAGAGACTTTTAGAACCTGCTTCGAACACAGTTCCTCTAATGCTTCAAACTCATCATTTGCAAGTTCTCTAAACTGTGAACGTGACGAGTCTCTATGTAATGCAAATAACGAGTGGGAAAACGGTCATTTTCTTTATAATCAGCCAATTGCTAGGGATAATCCAGTAAGATCAGATTTCCAGACCATTTCATCGATGGAAAACCTGGTTCAGAATGGCTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTGAGTCTAGCCACTTCCGAACCTGTGATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGCTGACTTTTTCTGGTGCTACTCAGCCTTGCTTGAACAACACAGAATTAGCCTGCAACTCCATGGACCTCTCTCTAAGTTACAGTTATGGTAGTAGTCCTGTTCATCCCTCTCAAGCAATATCAGGATCAAGATATCTTTCCGTCATTCAGGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCATCAACCACAGTTGGATTTGTCCCATTCTCATCAAGTTCCCTAGAGACTCAATGGCCGAAACCATCTGGTGATGCCAAGAGATCCCATCTGTTGACTTTACAACAACTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCACCGATTTGGATCCTCGCTTGCATTCTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGCATTCTAACACAGTGTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCGGAAGCAGTTGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAAAAGCACTTGCTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCTTTCAAAATGATGAAGGATGA 1938 43.14 MAELWIQEAIVMENGFLIREMKSIGLHGFIIWFGFKQSIRAKTNRWGVWVLTRPGRNRSFNKENPDIWITMTAVDQKMSGREQDKGDGTERRTWAISLKQRVSGSPNLHLFMEIQKPSSLNLLLLLLWDVSDLLWGVFVYNASKLESDLRNALVNMASTNSVIVAGFPILLTLRESGCPATDADDHIVDQLGFLGSSPMFTAPQRNDLVDVSGGCLNLSSNAEFQDQLAGAIPIASVSPVDAKDSAFSAPQFQQLETFRTCFEHSSSNASNSSFASSLNCERDESLCNANNEWENGHFLYNQPIARDNPVRSDFQTISSMENLVQNGWMPSNTMNSKLWNELSLSLATSEPVIVGGTNFLDQYSQLTFSGATQPCLNNTELACNSMDLSLSYSYGSSPVHPSQAISGSRYLSVIQDILSQIASYPLESSDQVSHSSTTVGFVPFSSSSLETQWPKPSGDAKRSHLLTLQQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHSHYTYQTITSVYKSLREKITNCILAMGMHSNTVCTKEKEKSFETTFIRKQLALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSFQNDEG 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3359268 3362034 - CmaCh12G006340.1 Cma12g00634 305124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00634 645 PANTHER HOMEOBOX PROTEIN ATH1 153 644 - -
Cma12g00634 645 SMART HOX_1 565 629 IPR001356 GO:0003677
Cma12g00634 645 Pfam Associated with HOX 405 521 IPR006563 -
Cma12g00634 645 Gene3D - 568 630 - -
Cma12g00634 645 CDD homeodomain 565 626 IPR001356 GO:0003677
Cma12g00634 645 SUPERFAMILY Homeodomain-like 569 634 IPR009057 -
Cma12g00634 645 ProSiteProfiles 'Homeobox' domain profile. 562 625 IPR001356 GO:0003677
Cma12g00634 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 644 - -
Cma12g00634 645 SMART prehox3 399 522 IPR006563 -
Cma12g00634 645 Pfam Homeobox KN domain 582 621 IPR008422 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00100 Cma12g00634 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00634 Cma-Chr12:3359268 Cma14g00361 Cma-Chr14:1592554 2.48E-42 dispersed
Cma05g00100 Cma-Chr5:423448 Cma12g00634 Cma-Chr12:3359268 0 transposed
Cma12g00634 Cma-Chr12:3359268 Cma05g00098 Cma-Chr5:421967 1.70E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36008 PF07526 POX 1.30E-15 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00634 - - mcha:111004597 707.597