Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00829 ATGGATCGGAGGAGACCTGCTAGTCCAGTCTACGCAAGGCAGTGGAGTGGCGGCTCGAGCAGCACAGGATCGTCCTCTCCTGCCATGTCGCCGGCTCATCCTCAGTCTCGATTGGGTACGTCTTCCACCATTAAGCGCGCTCAGAATGTTGCTGCCAAGAAAGCTGCTGAACGTTTGGCTCAGGTCATGGCGCAGACCCCTGAGGACGATGATGAAGACGATGATCTCAACTTTCGATTCGCTGCCCCACCTCCTCCTCGTACTCACTCGTCTTATCAAAGTGTTGTTAATAGTAACAGTACCAATTCGTTTCATACGATTTCGGGTCCCAGGATTAACAGATCTCCGTCCCCCGCGTTAGGTCGGAATTTCGTAGAGCATGTTCCTCAAGTTCGATCCACATCAGCTGGTAGATCATCGATGTCCGTGCGTTCCACACAGATCGTACCACCGAGTAAATCATCACTCAGAACTCCAGTCTCTATACCTCCAATTGAACCTCCTTCTAATAGGAATTCAGATAGAAGGTTTACACCAGATATCGGACAGGTGAACTCCAAAGATGCAGGAGATCAGCGGGAAGCTTCTGCACTACGTGATGAGCTTGATATGCTTCAAGAAGAGAATGAGAATTTACTCGAAAAGCTTCGACTAGCAGAAGATAAACGGGAAGAAGTGGAGGCTAGAGCTAGAATGCTAGAGAAACAGGTTGCTACTCTTGGAGAGGGTGTATCCTTGGAAGCTAAGTTATTGAGCAGGAAAGAAGCAGCCCTGCGTCAAAGAGAGGCTGCACTCAAAGCTGCAAAACCAACCAAGGATAGTAGAAATGAAGAAATTGCTGCTCTTCGTTCAGAAATTGAGAACTTAAAAGATGAGTCATCAGCTGCTACAGAACAGCTCCGGGAAGCAGAATCTGAAGCAAAGGCTCTACGTGTAATGACACAGAGAATGATTTTGACACAAGAAGAGATGGAGGAGGTTGTTTTGAAGAGGTGTTGGCTTGCTCGCTATTGGGGCTTAGCTGTTCAATATGGCATATGTGCGGATATAGCAATCTCAAAACATGAGTATTGGTCTTCTTTAGCTCCTCTGCCATTCGAAGTTGTTATTTCTGCAGGACAGAAGGCTAAGGAGGAGCCTGAAGGTCGAAATGATCAAGATAGGAGTAAGCTCATCCAGGACTTAAATGATCTCTCCGGGGAAGGGAATATTGAGAGTATGCTTTCAGTTGAAATGGGATTGAGAGAATTAACATCTCTAAAGACGCGAATGATAGCCCTTTGCAGCTTGAAGCATTCTGCAGTTGAAGATGCAACTGTGCTTGCATTGGCGCAACATAGGCGTCCAAGTTTGGTTCATCAATCTGATTCAAAAGCGTCTGCTGATCCGAAGTTTTCTGAGGCTTTTGAACTAAGTGAAGCTGAAGCTGAAGATGTTCTCTTTAAGGAGGCTTGGCTTACATACTTTTGGAGAAGAGCCAAGGCATATGGTGTCGATGAGGATGTTGCAGATGAGCGCCTCCAGTTTTGGATCAGTCGTAGTGGGCAGCCTCCGACTTCACATGATGCTGTGGATGTTGAACGAGGTCTTGTAGAGCTCAGAAAACTTGGAATAGAACAACAGCTTTGGGAGGCATCTAGAAAGGAAATCGATCAATCTTCTGCATTTTCACTCAGTAGTCACAAATCTGCAAAAGAAGAAGGCCAAGCCAATCACACAAGGCCAGTGAGCCACAACAGCCATACCACAGCCACAGCCACAGCCACAGCCACAGCCACAACCACGGCCACAGCCACAGCCAGAGACAGAGCAATATCTTCATTTGAACAAGCTGTAGATCCGTCATTTTCAGAGAAGCTTCCCACCATTTCTTTTCCCGTTCCCAAGAAACTCCTTGGAAACCACCCCACCCTTCATCATCATCATCATCATCATCTCATCATGCTTTCCAGAGCTGGGAACGTCCTGTGGATGGAAGAAGATAGCAAGGAAGAAGACTCTGCTTCCTGGACCAAAAACAACACCGACACCCATCTCACCCACCCTGCTAGTTCCTCTGTTTTCGACAACAACCACCAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGATGTTGAAGACGACTGGTGCATCAATGGAAATGCCCTCCATAACCATACCCACCACGCCGACATCAACGACATTACCTTCTCCCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCCTCTGCAGATTCCTCCTCTTCTTGCTCCCCTTCTTCCTCTGTCTTCAATAACATCGACCCATCTCAATTGCGCTTCTTTTTACCCCCAACCCGCACTTTCTCTTCACTCCACAAGCCCATTTCTAACAACCCTTTAGACCATCCCTTCGATTTGGGCGCAGAGTTTGGGTTTCTTGACGTCCAAGCTTCAAATTCTTCCACTCTGCTCAACAATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAAATGAACACTCCTAATTTGTGCTTAGCCTCTCAATTGACAGAGAATTGTTCGGGTTTAGCTGGATTTCAGAGTTTCGATGACAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCCTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGTTTAGCTGATAAGGGAAGCAATTTGGGGGGTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGATGGGAGCGTTGGCAAAAATGAGATCGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCGGATGAGTTTCAAGATACCAGCATCGACACATCCCGTTTCAATTACGATTCTGATGATTTTACTGAGCATAATAACAGTAAGTTGGATGAGAGCGGTAGAAATGTCGTAAATACATCAAACGCCAATAGTACGGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCAGCGAAGAATTTGATGGCTGAGAGGCGTCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCTGTTGTTCCCAAAATTAGCAAAATGGATAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTAAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAACTGGAATTTGCTCCTCCGGGGATGGCCTTGACGCCGAGCACAAGCTTTCATCCCCTAACTCCGACTCCGTCGAGCCTCTCGAGTCGTATAAAGGAGGAGCTATGTCCTAGTTCATTTCCCAGCCCAAATGGCCAACAACCTGCAAGGGTCGAAGTTCGGGTACGAGAAGGACGGGCGGTAAATATACACATGTTTTGCAGTCGTCGTCCTGGGCTCTTGCTCTCCACAGTTAGAGCATTAGATAATCTTGGATTAGACATCCAACAAGCTGTGATCAGCTGCTTTAATGGATTTGCCATGGACATTTTTCGAGCAGAGGCTGGAAATATTAGCCACGTGTCCATTGCATGTGAATGTAAGGTCAGTTGTTTAGTAGACAATCGCGTCCCTGGTTCTACGGCTGCGATCGTAGGGATTCCGGAAAAGAGCGCTAAAACAAAAGCAGCCCATCGGAAGCTCGGAATCCCGAAGAACGGAGAAATTCAGCAATTCATATTACCAACATCATTGGAGGTGAAGAACATGGCGGGGCCTGTGGAAGAGAACGACGGAACCAACAGCAAGGAAGAGCAAGAAGAGGCTTTGGTCGCTTTGATCGATCATCGTTGCCGTGAAGTTCAAAATCTCAAGCAGCGTATCTCCTACTATACTTCACAGCTTGAAGAAGCGGAGAAGAGATTACATGATTCAGAATCGAAATTGGCCCGGCTTCGACGTCAGGGCAATGCAGTGTCATCCAAAGATTCTTTTAGAAGTAGAGCCGTAAGTGTGAAAGTGGAGCAAACGGTAAATGAAGGTAGCAAGCCCCAGCCATATTCGAAACCAGAGCTTGTAATTCCGGCTGTTGTTCCAAAGATTTCCCAGAACAGTGCATTGGCTGGGAATGGAGCGAATATTTCAAATAGCTCCAGCTCCAGGGCTCAATCAAGTCCTTCTCATGTTAAGAATGTAATTAAAGTTGAAGGGGACAAAAATATTGGAAACTCTTCTCTTCGAGATTCTTCGAACACTTCTGATAGAGGGACAAAACGGAAGCTTGAACAGCAGTGCAAAGAGCATAAAGAATTGATTCCATTAATACGTAGCAGCTCATCACCTTCTCAAATCCGCTGTGTTGGGAGCAATCACATCTGCAGTCAGCATAAGAGAAAGTTGAGAAGTCTCATCTCATGCCCGGTTAACGAACAGCTATTCGTGACCAGTGCCCTGGATGGAGTAGTCAACTTGTGGCAGTTACAGGCCAGAGGGTCAAGTGCCTCTCTACTTAGTTCCGCCGACTGTGTATCTCCAAAGCAAAGGAGATGGCCAGAAGACATGGTCTGGCATCCAGAGGGGAACCGCGTATTTCTTGTTTATAGTGCTGATGGTGGGGACTCTCAGGTCTCAGTCATGAATCTGAACAAAAGTGAAGGGAAAGCTCGTGTTACCTTCCTTGAGGATAAGCCTCACTTTAAGGGCATTATCAACAGCATAATTTTCTTGCCCTGGGATAGCACGTCTTTTATCACTGGTGGAAGTGATCATGCTGTTGTACAATGGAAAGAGAAAGATGGGGAGAACACATGGAAGCCAAAGGCATTGCACAGAAACCTACACTCTTCAGCAGTCATGGGGGTAGCAGGGATGCAGCAGAAGCCAATCGTACTTTCTGCAGGTGCAGACAAGAGAATTCTTGGATTTGACGTAAATGTTGGTAGAACAGAGTTCAAGCATCAGATAGAAAGCAAATGCATGAGTATTTTGCCTAATCCATGCGATTTCAACCTATTTATGGTCCAAACAGGTACTCCTGGAAAGCAGCTCCGGTTATATGATATCAGACTTAGGCAGACAGAACTACATGCCTTCGGGTGGGAGCAAAAGAGCAGTGAATCACAGTCAGCATTGATAAATCAGGCTTGGTCGCCTGATGGTTTGGTTCTCACATCTGGCTCTGCTGACCCTGTAATCCATCTGTTTGATATCAGGTACAATTTGCACAAGCCTTCCCAATCCATTAGAGCTCATCAGAAACGAGTCTTCAAGGCTGTATGGCTTCAGTCTCTACCCCTCCTTATATCCATATCTTCTGATCTGAACGTTGGATTGCACAAAACAGCTTGA 5274 46.42 MDRRRPASPVYARQWSGGSSSTGSSSPAMSPAHPQSRLGTSSTIKRAQNVAAKKAAERLAQVMAQTPEDDDEDDDLNFRFAAPPPPRTHSSYQSVVNSNSTNSFHTISGPRINRSPSPALGRNFVEHVPQVRSTSAGRSSMSVRSTQIVPPSKSSLRTPVSIPPIEPPSNRNSDRRFTPDIGQVNSKDAGDQREASALRDELDMLQEENENLLEKLRLAEDKREEVEARARMLEKQVATLGEGVSLEAKLLSRKEAALRQREAALKAAKPTKDSRNEEIAALRSEIENLKDESSAATEQLREAESEAKALRVMTQRMILTQEEMEEVVLKRCWLARYWGLAVQYGICADIAISKHEYWSSLAPLPFEVVISAGQKAKEEPEGRNDQDRSKLIQDLNDLSGEGNIESMLSVEMGLRELTSLKTRMIALCSLKHSAVEDATVLALAQHRRPSLVHQSDSKASADPKFSEAFELSEAEAEDVLFKEAWLTYFWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQQLWEASRKEIDQSSAFSLSSHKSAKEEGQANHTRPVSHNSHTTATATATATATTTATATARDRAISSFEQAVDPSFSEKLPTISFPVPKKLLGNHPTLHHHHHHHLIMLSRAGNVLWMEEDSKEEDSASWTKNNTDTHLTHPASSSVFDNNHQITSLSTFKSMLDVEDDWCINGNALHNHTHHADINDITFSQNFTDPPDNLLLPSADSSSSCSPSSSVFNNIDPSQLRFFLPPTRTFSSLHKPISNNPLDHPFDLGAEFGFLDVQASNSSTLLNNGGGLLTGFTDLSPTSQMNTPNLCLASQLTENCSGLAGFQSFDDNLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSNLGGLSPDGGWFSNRIDGSVGKNEIGDENGKKRKMIYADEFQDTSIDTSRFNYDSDDFTEHNNSKLDESGRNVVNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPPGMALTPSTSFHPLTPTPSSLSSRIKEELCPSSFPSPNGQQPARVEVRVREGRAVNIHMFCSRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEAGNISHVSIACECKVSCLVDNRVPGSTAAIVGIPEKSAKTKAAHRKLGIPKNGEIQQFILPTSLEVKNMAGPVEENDGTNSKEEQEEALVALIDHRCREVQNLKQRISYYTSQLEEAEKRLHDSESKLARLRRQGNAVSSKDSFRSRAVSVKVEQTVNEGSKPQPYSKPELVIPAVVPKISQNSALAGNGANISNSSSSRAQSSPSHVKNVIKVEGDKNIGNSSLRDSSNTSDRGTKRKLEQQCKEHKELIPLIRSSSSPSQIRCVGSNHICSQHKRKLRSLISCPVNEQLFVTSALDGVVNLWQLQARGSSASLLSSADCVSPKQRRWPEDMVWHPEGNRVFLVYSADGGDSQVSVMNLNKSEGKARVTFLEDKPHFKGIINSIIFLPWDSTSFITGGSDHAVVQWKEKDGENTWKPKALHRNLHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFKHQIESKCMSILPNPCDFNLFMVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLVLTSGSADPVIHLFDIRYNLHKPSQSIRAHQKRVFKAVWLQSLPLLISISSDLNVGLHKTA 1757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6934779 6954838 + CmaCh13G008290.1 Cma13g00829 306656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00829 1757 CDD Prefoldin 192 303 - -
Cma13g00829 1757 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1220 1756 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 1294 1331 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 87 113 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 131 159 - -
Cma13g00829 1757 Gene3D - 1642 1757 IPR015943 GO:0005515
Cma13g00829 1757 Gene3D - 992 1061 IPR036638 GO:0046983
Cma13g00829 1757 MobiDBLite consensus disorder prediction 1299 1326 - -
Cma13g00829 1757 CDD ACT_UUR-ACR-like 1119 1160 - -
Cma13g00829 1757 Coils Coil 1037 1057 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 972 991 - -
Cma13g00829 1757 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1001 1069 IPR036638 GO:0046983
Cma13g00829 1757 MobiDBLite consensus disorder prediction 131 192 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 1376 1403 - -
Cma13g00829 1757 Coils Coil 195 236 - -
Cma13g00829 1757 Gene3D - 1342 1641 IPR015943 GO:0005515
Cma13g00829 1757 MobiDBLite consensus disorder prediction 573 598 - -
Cma13g00829 1757 Coils Coil 272 313 - -
Cma13g00829 1757 SMART WD40_4 1528 1571 IPR001680 GO:0005515
Cma13g00829 1757 SMART WD40_4 1578 1618 IPR001680 GO:0005515
Cma13g00829 1757 SMART WD40_4 1716 1755 IPR001680 GO:0005515
Cma13g00829 1757 SMART WD40_4 1425 1468 IPR001680 GO:0005515
Cma13g00829 1757 SMART WD40_4 1673 1711 IPR001680 GO:0005515
Cma13g00829 1757 Coils Coil 1263 1297 - -
Cma13g00829 1757 SUPERFAMILY WD40 repeat-like 1443 1751 IPR036322 GO:0005515
Cma13g00829 1757 MobiDBLite consensus disorder prediction 554 598 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 13 48 - -
Cma13g00829 1757 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 998 1047 IPR011598 GO:0046983
Cma13g00829 1757 CDD bHLH_AtAMS_like 1001 1064 - -
Cma13g00829 1757 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1220 1756 - -
Cma13g00829 1757 SMART finulus 1004 1053 IPR011598 GO:0046983
Cma13g00829 1757 MobiDBLite consensus disorder prediction 966 998 - -
Cma13g00829 1757 MobiDBLite consensus disorder prediction 1 118 - -
Cma13g00829 1757 Pfam Helix-loop-helix DNA-binding domain 1005 1047 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00829 Cma18g00295 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00020 Cma-Chr8:117072 Cma13g00829 Cma-Chr13:6934779 0 dispersed
Cma13g00829 Cma-Chr13:6934779 Cma14g00762 Cma-Chr14:3798446 3.01E-129 dispersed
Cma12g01096 Cma-Chr12:8661916 Cma13g00829 Cma-Chr13:6934779 2.39E-115 transposed
Cma18g00295 Cma-Chr18:1562799 Cma13g00829 Cma-Chr13:6934779 0 transposed
Cma11g00013 Cma-Chr11:61113 Cma13g00829 Cma-Chr13:6934779 0 wgd
Cma13g00829 Cma-Chr13:6934779 Cma17g01405 Cma-Chr17:9299733 0 wgd
Cma13g00829 Cma-Chr13:6934779 Cma18g00292 Cma-Chr18:1555718 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36122 PF00010 HLH 8.30E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00829 - - mcha:111008730 942.954