Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00889 ATGGGTCTAACTTCTCTACAAGTCTGCATGGACTCCTCTGATTGGCTGCAGGGCACCATTAACGAGGAGTCTGGCATGGATTCTTCGTCGCTATCAGGGGACATGCTGTCATGTTCAAGGCCGCTGACAGAGAGGAGGCTTAGACCCCCACATGATCAAGCACTGAAATGCCCAAGATGTGACTCAACCCACACCAAATTTTGCTACTACAACAATTACAGCCTCACCCAGCCGCGTTACTTTTGCAAGACATGTCGTAGGTACTGGACCAAAGGCGGCACTCTTCGTAACATCCCTGTCGGTGGTGGCTGTCGAAAGAACAAGAAAGTTGCCACTACAAAGAAATCCAATGACCCACAACACCAACAGCCACAAAATCAACAACCCATCTCCCAAAATCACCACCAAGGCTCTTCTTCTTCTTCTGCCCATCACATTCACAACCCCACTGATCTCCATCTCTCATTTCCCGACCAAGTACAATTCCCTCATTTCAACCATCTCATTGGAACAACCCCAAGTTTCATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAGCATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCAGATCACTTGGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGCCGGCCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATAGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCGACAACGAACCCATTGGTGTAA 993 48.24 MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVATTKKSNDPQHQQPQNQQPISQNHHQGSSSSSAHHIHNPTDLHLSFPDQVQFPHFNHLIGTTPSFMDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7183557 7185058 - CmaCh13G008890.1 Cma13g00889 306716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00889 330 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Cma13g00889 330 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Cma13g00889 330 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Cma13g00889 330 MobiDBLite consensus disorder prediction 116 148 - -
Cma13g00889 330 PANTHER - 11 324 - -
Cma13g00889 330 MobiDBLite consensus disorder prediction 100 152 - -
Cma13g00889 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 324 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00228 Cma13g00889 CCT
Cma10g00281 Cma13g00889 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00281 Cma-Chr10:1252523 Cma13g00889 Cma-Chr13:7183557 1.90E-32 dispersed
Cma11g00228 Cma-Chr11:1151250 Cma13g00889 Cma-Chr13:7183557 3.02E-33 dispersed
Cma13g00889 Cma-Chr13:7183557 Cma20g00463 Cma-Chr20:2233484 2.03E-37 dispersed
Cma13g00889 Cma-Chr13:7183557 Cma18g00167 Cma-Chr18:848291 4.85E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36128 PF02701 zf-Dof 3.30E-33 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00889 - - csv:101223232 528.48