Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00908 ATGTTTCACAGAAACATTAATGGAGGAGTAAACAAGGCGAAGACGAAGGTTGTTTTTCTCCATCTTTGCTCACCAAAACGCAGCTTGTCGCTCTCATCTCGCGATTTCACTACCCAATCGGAACCCCAATCTTGCTCCGCCCTAGATGCCACCGCTGTGGATATCGCCAATCTTGTCCTAGAATCTGCCCCAAAAAGCTTGAGGGGAATCCTCCATGGATCACAAGTTCAATTTACGCCTGAACTTGTGAACAAGGTTCTCAAGCGCCTATGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACAACTCGAGTACCATCCATCTTATGCCCATTCCTCGTCTTCCTTCGACCATGCCATCGACATTGCAGGCCGTATGCGCGACTACAAGTCTGTGTGGGCTCTAGTGGCTCGAATGCGAGCTCGGCGGATTGGACCCAGTTCGAAAACCTTCGCAATTATTGCTGAGAGGTTCGTAGGCGCTGGAAAACCAGACAGAGCGATCAAGGTTTTCTTGTCCATGCGGGAGCATGGCTGTCGTCAGGATCTGCATTCATTTAACACCATTCTTGATATCCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACCATCTATTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGCTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACTCCGAAAGCACTGGAGATTTTGAAGGAGATGGTGGATAGAGGTTTGACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAATGAAGCTTGGCTGTTCTTTTTGCAAATGAAAGAGAGGGAAGTTGAAATTGATGTTGTTACTTACACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCCCGAAAGGTTTTTGATGAGATGGTTGGTGAAGGTGTTCTTCCTTCAACAGCAACTTACAATGCTATGATACAGGTTTTGTGTAAGAAAGATAGCGTGGAGAATGCAGTAATGTTGTTTGAGGATATGATGAACAGGGGTTATGTGCCAAATTTGACCACATATAATGTGCTTATAAGAGGATTGTGTCATGCAGGCAATATGGATAAGGCTATGGAGTTCATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTTGTCATTCGGTACTTTTGTGATGCTGGTGACATAGAAAAGGGGTTGAGTGTGTTTGAGAAGATGGGCCACATAGGTTGTTTACCAAATTTGGATACTTATAATGTTATGATTAGTGCAATGTTTGTGAGGAAAGAGTCTAAAGATCTAGTGGTTGCTGGGAAGCTGTTGGTTGAGATGATCGATAAAGGATTCCTCCCTCGAAAAGCCAATGTGGTCGCCTTCCTCGTAAATTTAAGTTATGAAGCCATTGTCGCTACGAATGATGCGAGTTTCAGTGCAATGAAGGGCAAGTTAGTTTATAAGTGGACACTGAGTTCATTTGTTTCAAGGTCTCATATCAAGACTCGATCAGTTTTAGATCTGCTGAGCGGCGGCCGGACTGTGACGACTGATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTGTTCCTCCAGGCACCACACTTACATTTTTTGAGCTTGTATGACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATTGTGAATGTCTTGGAAAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAGGATCTTAAAGAAGAGGGCTTGAAGGAAAATTGTACTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAAGACGATGATGAAAGATTTTCCAATCCGACTGGAAGCCAGAACTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGCTGAAAGCCGTTGGCTGTCCTCCGCCAACATTTGTACGGTTTGGCCATCAGGGCATTAGAATAATTTTGGCGTTACAGGTGAATATGATTTCCCTTGATGAAGCAGCAAAACTCTTATTAGGAGATGGTCACAATTCATCAATAATGAGAACAAAGACCCATACAGCTGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGGGTGAGGGGTAAGGTCAAGAGTGAGCATACCGTTCTTCCAGAGGCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCCGAAAGTTCTGCCTATCAGGGTTTAAATCATTGTCTCAATGTGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAGTTTGGACCGTTTTCTCCAGTAACAGTAGCTAAGGTTAGTGTCTCAGATAATAACAATGTGAAGCGGAGTCATGACTGGGAAAGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGGTAATCCCTCTAATTAA 2571 44.22 MFHRNINGGVNKAKTKVVFLHLCSPKRSLSLSSRDFTTQSEPQSCSALDATAVDIANLVLESAPKSLRGILHGSQVQFTPELVNKVLKRLWFHGPKALQFFKQLEYHPSYAHSSSSFDHAIDIAGRMRDYKSVWALVARMRARRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNHLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEILKEMVDRGLTPTITTYNIVLKGYFRAGQINEAWLFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMVGEGVLPSTATYNAMIQVLCKKDSVENAVMLFEDMMNRGYVPNLTTYNVLIRGLCHAGNMDKAMEFMERMKTDGCEPNVQTYNVVIRYFCDAGDIEKGLSVFEKMGHIGCLPNLDTYNVMISAMFVRKESKDLVVAGKLLVEMIDKGFLPRKANVVAFLVNLSYEAIVATNDASFSAMKGKLVYKWTLSSFVSRSHIKTRSVLDLLSGGRTVTTDGGSAILFRSTGFLFLQAPHLHFLSLYDHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCTASDGNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSSLKAVGCPPPTFVRFGHQGIRIILALQVNMISLDEAAKLLLGDGHNSSIMRTKTHTADTRKPAFRWLGVRGKVKSEHTVLPEARKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNVQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFSPVTVAKVSVSDNNNVKRSHDWESLSSTFRPQYHNQGNPSN 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7271261 7276776 - CmaCh13G009080.1 Cma13g00908 306735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00908 856 Gene3D Tetratricopeptide repeat domain 60 208 IPR011990 GO:0005515
Cma13g00908 856 Gene3D Tetratricopeptide repeat domain 340 451 IPR011990 GO:0005515
Cma13g00908 856 PANTHER OS02G0679200 PROTEIN 29 468 - -
Cma13g00908 856 SMART E2F_TDP_2 513 605 IPR003316 GO:0005667|GO:0006355
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 326 358 IPR002885 -
Cma13g00908 856 TIGRFAM PPR: pentatricopeptide repeat domain 151 183 IPR002885 -
Cma13g00908 856 Gene3D - 545 608 IPR036388 -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Cma13g00908 856 SUPERFAMILY Winged helix DNA-binding domain 549 603 IPR036390 -
Cma13g00908 856 MobiDBLite consensus disorder prediction 826 856 - -
Cma13g00908 856 Pfam PPR repeat 162 180 IPR002885 -
Cma13g00908 856 Pfam PPR repeat 186 205 IPR002885 -
Cma13g00908 856 Pfam PPR repeat 220 250 IPR002885 -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cma13g00908 856 Gene3D Tetratricopeptide repeat domain 209 339 IPR011990 GO:0005515
Cma13g00908 856 MobiDBLite consensus disorder prediction 835 856 - -
Cma13g00908 856 Pfam E2F/DP family winged-helix DNA-binding domain 552 605 IPR003316 GO:0005667|GO:0006355
Cma13g00908 856 MobiDBLite consensus disorder prediction 648 668 - -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Cma13g00908 856 Pfam PPR repeat family 252 299 IPR002885 -
Cma13g00908 856 Pfam PPR repeat family 392 439 IPR002885 -
Cma13g00908 856 Pfam PPR repeat family 322 371 IPR002885 -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Cma13g00908 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cma13g00908 856 MobiDBLite consensus disorder prediction 790 814 - -
Cma13g00908 856 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 29 468 - -
Cma13g00908 856 MobiDBLite consensus disorder prediction 624 668 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00290 Cma13g00908 CCT
Cma11g00217 Cma13g00908 CCT
Cma10g00152 Cma13g00908 CCT
Cma13g00908 Cma18g00144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00460 Cma-Chr13:5069691 Cma13g00908 Cma-Chr13:7271261 3.04E-07 dispersed
Cma13g00908 Cma-Chr13:7271261 Cma15g00654 Cma-Chr15:3113406 2.40E-23 dispersed
Cma20g00153 Cma-Chr20:751925 Cma13g00908 Cma-Chr13:7271261 4.62E-07 dispersed
Cma10g00152 Cma-Chr10:697829 Cma13g00908 Cma-Chr13:7271261 1.13E-72 wgd
Cma13g00908 Cma-Chr13:7271261 Cma18g00144 Cma-Chr18:726434 4.17E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36129 PF02319 E2F_TDP 5.60E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00908 - - cmax:111495100 940.258