Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00989 ATGGCAGGTTCATCCAAAAGTCCAGAGTGCGGCGGAGAGGGAACCCAACCTTCGTCGTCGTTAATGGATAGCTTATTGGGTCTTCTTCGGGTTCGGGTCATTCGCGGCGTCAACCTCGCCGTACGCGACGTCCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAACAGAAGTTGAAGACCCGCGTGATCAAAAAGGACATCAATCCCGAATGGAACGAGGATCTCACTCTATCTGTTACAGAACCGAACGCTACAGTCAAGCTGACAGTGTACGACCACGACACGTTCAGCATGGACGACAAAATGGGAGTCGCGGAGTTCGAGATCAGACCATTCATCGAAGCATTGCAAATGAATTTAGCAGAGGTACCAAGTGGAACGGTAGTGTCAAGAGTGCAGCCAAGCAGGCAAAATTGCCTAGCTGAAGAGAGCCCCATTGTGTGGGAGGATGGCAAGGTTGTTCAAAACATTTGCCTACGCTTGCGCAACGTCGAGCGTGGCGAAGTCGAGATCCAGCTGCTATGGATCGATCTACCCGGTTCTAAAGCTGCATTGACCACGTGCTCCAAGACATGGATGGAACTGAGTGGCTACACGACGGTTGAACCTGGTAAAGAAAAGGAGCGTCTTGAGAAGATACCGGGAAAAATAAAGAAGGCTTGGGGTCCCGCGTGGCGTGTACCCGGCGTCGCTAACTATGTGAATCGCTTCAAGTCTACACTTCTTCTCCAACGCTGTTTATATAAGAAATGA 759 50.46 MAGSSKSPECGGEGTQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTEPNATVKLTVYDHDTFSMDDKMGVAEFEIRPFIEALQMNLAEVPSGTVVSRVQPSRQNCLAEESPIVWEDGKVVQNICLRLRNVERGEVEIQLLWIDLPGSKAALTTCSKTWMELSGYTTVEPGKEKERLEKIPGKIKKAWGPAWRVPGVANYVNRFKSTLLLQRCLYKK 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7660727 7662216 - CmaCh13G009890.1 Cma13g00989 306816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00989 252 Gene3D C2 domain 23 195 IPR035892 -
Cma13g00989 252 Pfam C2 domain 27 113 IPR000008 -
Cma13g00989 252 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 170 IPR035892 -
Cma13g00989 252 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 14 185 - -
Cma13g00989 252 SMART C2_3c 28 123 IPR000008 -
Cma13g00989 252 CDD C2_ArfGAP 26 169 - -
Cma13g00989 252 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 185 IPR044562 -
Cma13g00989 252 ProSiteProfiles C2 domain profile. 10 127 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00989 Cma18g00074 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00989 Cma-Chr13:7660727 Cma14g00837 Cma-Chr14:4298388 3.32E-79 dispersed
Cma10g00328 Cma-Chr10:1510138 Cma13g00989 Cma-Chr13:7660727 1.94E-91 wgd
Cma11g00314 Cma-Chr11:1562997 Cma13g00989 Cma-Chr13:7660727 7.41E-88 wgd
Cma13g00989 Cma-Chr13:7660727 Cma18g00074 Cma-Chr18:329922 4.16E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00989 - - cmax:111495729 456.447