Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01013 ATGAAATCCTTCTTCTTCTTCTTCCTCTTCACGTTTCATCTATCGACATGCTTCAGCGACAACGCCCTCGATGCATTCAAAGATTGCGGTGTGAGTTACAATTGTGGAGAATTGGTAAACATCACGTACCCATTTTGGGGGAATGAGAAGCAGAGTTCTTGTGGGCGGAAAGAATTCAAACTCAACTGCAAAAGCAACCGAACCACCACGACTTACATCAATTCTCTGGAATACAACGTTCTGGAAATCAACCAATCGAATAATACAATGAGGATCGCAAGATCAGACCTCTTCGATAATTACTGCCCACGAAATCAAATCCAAGTGGCCTCTATAGATCACCATCCGTTTGCGTATTCTTCCAGAAATCAGAACATCTCGGTGGGGTATAATTGCTCGCCGGATAACGAATTTCTAATTTCGAAATACAAGTTTTCGTGCGGTGGGGAATGGCAAAGGCGAGGGAGAGTGAACTACGCTTTTGAACCGTCGGCGGCGGTTTATTCAAAGCTTGCGGAGTGTGAAATGAAGATAGAAGTGATGGTTACGATAAAGGAGTTGAAGGAAGGTTTAAAGAACAGGACGAGCTTGGTGGAGACGGCTGTGAAAGGAGGGTTCGAGGTGGAGTACGAGAATTGGTATAAGGGAGCGTGTGATTCATGCAACGGAAGTGGAGGCAATTGCGGCGGAAACGGGACGTACCCATTTTACTGCATTTGTAGAAACGAAGTTGCAAATCCTTATGCCTGTGATGCCATTGCTGCGCCTCCTCGCCCTCCTCACCCTTCTCACCCTGAAAACCCAAATGATACATGGAAGAAGGTCGTCATAGGTGCTGGATCTGGTATTGGAGGCATTGTGATGATGAGTATAATCTTTTTCATCAGGCTTCGTATGCACAAAAAGAAGCATCAAAACTATTCTTGTGATCGTCCGATGAAGGAGCTTGAGAAAATAGAACATTACATGGCTCTATCTCTTTTCTCTTATCACGAACTTGTAAAAGCTACAGACAAATTCAACCCAGCTAACGAACTTGGAGATGGTGGCTTTGGCACTGTCTACTATGGCAAACTCCGAGATGGGCGTGAGGTCGCTGTTAAACGATTGTTTGAAAATAACTATAGAAAAGTTGAGCAATTCATGAATGAGGTTGAGATGCTCACTCGTTTGCGCCACCCACATCTTGTCACCCTTTATGGATGCACATCTCGACGCTCCCGTGAGCTCTTGTTGGTGTATAAGTTCATTCCGAATGGTACTGTGGCCGATCATCTTCATGGCAACCGAGCAAGATCAGGTGAGCTTCCATGGCTTACAAGGTTGAAGGTTGCCATAGAGACTGCAAGTGCTCTGGCTTTTCTCCATGCTTCTGAGACTATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAACAATTTCGGTGTTAAAGTCGCTGATTTCGGACTATCTCGCCTTTTTCCTACACAAGCTAGCCATGTTTCAACTGCACCACAAGGCACTCCTGGCTATATTGATCCAGAGTATTATGAGTCTTATCAACTTACGAACAAAAGCGATGTCTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCGAAGCCTGCAGTTGATATCACTAGGCACAGGCATGAGATTAACCTGTCAACAATGGCTATCAATAAGATCCAAAACGACGAATTACATGACTTCGTAGACCCATCTCTCGGATTTAAAACCGATCAAAGAATCAGAAATATGATATGCGGAGTTGCCGAGTTAGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGGCCGTCAATGATGGAAGCTCTAGAAATTCTAAGGAATATAGAGAATCGAAGTTGTGGCACAGGGAAAGCACCATTAGTGCCAGAATCCCCAGACTCCGTCACTGTGCTTTGGATTAGCAAAACTTCCACACCAAACGGTAGTGGGTGA 1953 44.65 MKSFFFFFLFTFHLSTCFSDNALDAFKDCGVSYNCGELVNITYPFWGNEKQSSCGRKEFKLNCKSNRTTTTYINSLEYNVLEINQSNNTMRIARSDLFDNYCPRNQIQVASIDHHPFAYSSRNQNISVGYNCSPDNEFLISKYKFSCGGEWQRRGRVNYAFEPSAAVYSKLAECEMKIEVMVTIKELKEGLKNRTSLVETAVKGGFEVEYENWYKGACDSCNGSGGNCGGNGTYPFYCICRNEVANPYACDAIAAPPRPPHPSHPENPNDTWKKVVIGAGSGIGGIVMMSIIFFIRLRMHKKKHQNYSCDRPMKELEKIEHYMALSLFSYHELVKATDKFNPANELGDGGFGTVYYGKLRDGREVAVKRLFENNYRKVEQFMNEVEMLTRLRHPHLVTLYGCTSRRSRELLLVYKFIPNGTVADHLHGNRARSGELPWLTRLKVAIETASALAFLHASETIHRDVKTTNILLDNNFGVKVADFGLSRLFPTQASHVSTAPQGTPGYIDPEYYESYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNDELHDFVDPSLGFKTDQRIRNMICGVAELAFQCLQSVRDTRPSMMEALEILRNIENRSCGTGKAPLVPESPDSVTVLWISKTSTPNGSG 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7795485 7797810 + CmaCh13G010130.1 Cma13g01013 306840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01013 650 Gene3D Transferase(Phosphotransferase) domain 1 417 621 - -
Cma13g01013 650 ProSiteProfiles Protein kinase domain profile. 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01013 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 4 636 - -
Cma13g01013 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 636 IPR044652 -
Cma13g01013 650 SMART serkin_6 340 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g01013 650 Gene3D Phosphorylase Kinase; domain 1 310 416 - -
Cma13g01013 650 Pfam Wall-associated receptor kinase galacturonan-binding 34 94 IPR025287 GO:0030247
Cma13g01013 650 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Cma13g01013 650 Pfam Wall-associated receptor kinase C-terminal 166 242 IPR032872 -
Cma13g01013 650 Pfam Protein tyrosine and serine/threonine kinase 344 609 IPR001245 GO:0004672|GO:0006468
Cma13g01013 650 SUPERFAMILY Protein kinase-like (PK-like) 314 612 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00308 Cma13g01013 CCT
Cma11g00286 Cma13g01013 CCT
Cma10g00308 Cma13g01013 ECH
Cma11g00286 Cma13g01013 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00400 Cma-Chr1:2027839 Cma13g01013 Cma-Chr13:7795485 9.48E-162 dispersed
Cma13g01011 Cma-Chr13:7785800 Cma13g01013 Cma-Chr13:7795485 7.31E-62 dispersed
Cma13g01013 Cma-Chr13:7795485 Cma14g01176 Cma-Chr14:9379243 1.82E-176 dispersed
Cma13g01012 Cma-Chr13:7790968 Cma13g01013 Cma-Chr13:7795485 2.56E-114 tandem
Cma13g01013 Cma-Chr13:7795485 Cma18g01002 Cma-Chr18:8418549 6.60E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69033 PF07714 PK_Tyr_Ser-Thr 9.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01013 - - mcha:111008789 882.478