Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01058 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATTAATATGCAAGTCACCTTCTCCAAGAGAAGGTCTGGTCTGCTGAAGAAGGCTCATGAGATTTCAGTTCTGTGCGATGCTGAGGTTGCTCTTATCGTCTTCTCCACCAAGGGCAAGCTGTTTGAATACTCCACTGACTCATGCATGGAGAAGATCCTTGAGCGTTATGAAAGGTACTCGTACGCAGAGAGGCGGCTTGTTGCGAATGATAGCCAATCAAACGGAAATTGGACTCTTGAATATGCAAAGCTTAAAGCCAGAATAGAGGTTCTTCAGAAGAACCACAGGCATTTCATGGGGGAAGATCTTGAGTCCTTGAGTCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCGCTCAAGCATGTAAGAGCCAGGAAGAACCAACTCATGCATGAATCCATTTCAGATCTTCAGAAAAAGGACAAGGCGCTTCAGGACCAAAATAACATGTTAGCCAAGAAGATAAGGGAGAAGGAGAAAGCACAAGCTCAAAATCCACAAATGGAGCAGCAGCATAGCCATGCCATTGAACCTTCTCCACTTCTTCTTCCTCAGCCATTCCAATCTCTTAACATGCCTTGTCCTTACCCAACACACGCCACCGGACACGAAGAATCCGCCGCCAACCACGACAGATCCGGCACCCTCCTGCCGCCCTGGATGCTCGGCCACCACCTTGAGGGAGCTGAAGTTTGTTTGGTCTCTGTTTTCATGGCTTGTTTCTGGGTTTGTTCTAGGCCACAACACAAAAAACCCATCTCAGATTCTGTGGAAAATGTCCAAAAGAAGGAGCTTTTAGGAAGTGTTGTTAGTGGGGAAGAAGAGTTCAGCTCTGATAGCTCCAAAGCTTCGTCTGAAAATGGAAACAGAGTAATGGTGGTTGTGGATTGGAGCGTTGAGGCTGAAGGGGCTTTGGAATGGACACTCTCTCATGCTGTTCGGAGCCATGACACCATTGTTCTTGTTAATGTTCTCAAGAGTTTGAAGCCTCGAGGTTTTGAGTTTGGGAATAAGGTGAATTCCACAAAGGAGGCCTATAAGCTTCTGTTTTCTATGAGAAACATGTGCTTAAAGAGAAGGCCTGAGGTGCAAGTAGAGATGGCATTACTAGAAGGGAAAGAAAGAGGTCCAATAATTGTGGAAGAAGCTAAGAAGCATAAACTCTCTCTTTTGGTACTTGGTCAAAGAAAGAGGCCGATCCTTCGGCGTCTATTGAAAAGATGGGCGACAGGACGCTATCGAAGGAGAAGGAAGAAGAAGAGTTGTCGAGCAACGGCGGAGTATTGCATTCAGAACTCCTCTTGCATGACCATTGCAGTGAGGAAGAAGAGCAAAAAGATTGGAGGATATTTGATCACGACCAAACGTCACAAGAACTTCTGGCTCTTGGCTTGA 1446 45.78 MGRGRVQLKRIENKINMQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDSQSNGNWTLEYAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHVRARKNQLMHESISDLQKKDKALQDQNNMLAKKIREKEKAQAQNPQMEQQHSHAIEPSPLLLPQPFQSLNMPCPYPTHATGHEESAANHDRSGTLLPPWMLGHHLEGAEVCLVSVFMACFWVCSRPQHKKPISDSVENVQKKELLGSVVSGEEEFSSDSSKASSENGNRVMVVVDWSVEAEGALEWTLSHAVRSHDTIVLVNVLKSLKPRGFEFGNKVNSTKEAYKLLFSMRNMCLKRRPEVQVEMALLEGKERGPIIVEEAKKHKLSLLVLGQRKRPILRRLLKRWATGRYRRRRKKKSCRATAEYCIQNSSCMTIAVRKKSKKIGGYLITTKRHKNFWLLA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8032668 8037903 - CmaCh13G010580.1 Cma13g01058 306885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01058 481 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma13g01058 481 CDD USP_Like 307 457 - -
Cma13g01058 481 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 Coils Coil 88 108 - -
Cma13g01058 481 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cma13g01058 481 Gene3D HUPs 306 466 IPR014729 -
Cma13g01058 481 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma13g01058 481 MobiDBLite consensus disorder prediction 209 229 - -
Cma13g01058 481 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 261 481 - -
Cma13g01058 481 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 306 459 - -
Cma13g01058 481 Coils Coil 151 188 - -
Cma13g01058 481 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma13g01058 481 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cma13g01058 481 Pfam Universal stress protein family 307 458 IPR006016 -
Cma13g01058 481 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 Coils Coil 122 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01058 K09264 K09264; MADS-box transcription factor, plant - csv:101207225 395.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00224 Cma13g01058 CCT
Cma11g00224 Cma13g01058 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02358 Cma-Chr4:16356214 Cma13g01058 Cma-Chr13:8032668 2.56E-25 dispersed
Cma06g01288 Cma-Chr6:8566579 Cma13g01058 Cma-Chr13:8032668 2.14E-19 dispersed
Cma13g01058 Cma-Chr13:8032668 Cma14g01149 Cma-Chr14:9050926 1.12E-55 dispersed
Cma14g01848 Cma-Chr14:13162165 Cma13g01058 Cma-Chr13:8032668 4.73E-17 dispersed
Cma15g00682 Cma-Chr15:3263758 Cma13g01058 Cma-Chr13:8032668 1.35E-23 dispersed
Cma12g00108 Cma-Chr12:442992 Cma13g01058 Cma-Chr13:8032668 4.53E-85 transposed
Cma01g00423 Cma-Chr1:2127490 Cma13g01058 Cma-Chr13:8032668 3.73E-56 wgd
Cma11g00224 Cma-Chr11:1122547 Cma13g01058 Cma-Chr13:8032668 1.23E-55 wgd
Cma13g01058 Cma-Chr13:8032668 Cma14g01148 Cma-Chr14:9009460 3.48E-88 wgd
Cma13g01058 Cma-Chr13:8032668 Cma18g01096 Cma-Chr18:8982094 1.29E-54 wgd
Cma13g01058 Cma-Chr13:8032668 Cma18g00020 Cma-Chr18:80281 6.05E-49 wgd
Cma13g01058 Cma-Chr13:8032668 Cma04g01711 Cma-Chr4:8609437 6.84E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g436 . . . . . Bpe13g00318 . . Cmo13g01102 . . Cma11g00224 . Car11g00200 Sed08g2163 Cpe20g00090 . Bhi02g00072 Tan09g2012 Cmetu02g0670 . Hepe09g0289 . . Cla06g01526 Cam06g1683 Cec06g1745 Cco06g1743 Clacu06g1650 Cmu06g1597 Cre06g2408 . . . . Lsi02g00139 Csa01g00623 Chy12g01478 Cme12g01919 . . Bda11g01768 Bda14g00892 . Bpe15g00566 Bma03g00868 . Sed01g2281 . Cmo11g00227 Cma13g01058 . Car13g00893 . . . Bhi08g01057 Tan05g2333 Cmetu12g1433 Lac10g0185 Hepe07g2443 . . . . . . . . . Lsi06g01395 Csa01g00337 Chy02g02405 Cme02g01809
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma20g00254 . 16 251 MADS-box Gene Family AT3G58780 67.8 1.7e-80 296.6
Cma07g00152 CCT,CST 205 428 MADS-box Gene Family AT3G58780 64.0 4.1e-74 275.4
Cma13g00575 CCT 15 211 MADS-box Gene Family AT3G58780 66.5 1.0e-69 260.8
Cma01g00837 . 1 189 MADS-box Gene Family AT3G58780 70.4 4.0e-69 258.8
Cma03g01355 CCT,CST 7 215 MADS-box Gene Family AT3G58780 58.5 6.6e-64 241.5
Cma13g01058 CCT,ECH 1 205 MADS-box Gene Family AT1G26310 64.3 7.5e-68 254.6
Cma18g00020 . 269 483 MADS-box Gene Family AT1G26310 62.0 1.2e-65 247.3
Cma14g01148 CST 1 229 MADS-box Gene Family AT1G26310 54.5 6.8e-61 231.5
Cma12g00108 . 1 164 MADS-box Gene Family AT1G26310 66.9 6.4e-59 224.9
Cma01g00424 CST 74 253 MADS-box Gene Family AT1G26310 63.5 3.9e-56 215.7
Cma01g00423 CST 1 196 MADS-box Gene Family AT1G26310 51.7 2.2e-43 173.3
Cma12g00107 . 1 173 MADS-box Gene Family AT1G26310 55.1 6.4e-43 171.8
Cma08g00942 . 1 158 MADS-box Gene Family AT1G26310 58.5 5.4e-42 168.7
Cma01g00837 . 1 237 MADS-box Gene Family AT4G09960 66.2 1.7e-74 276.6
Cma07g00152 CCT,CST 207 397 MADS-box Gene Family AT4G09960 67.7 2.4e-65 246.1
Cma20g00254 . 22 201 MADS-box Gene Family AT4G09960 70.6 2.7e-64 242.7
Cma13g00575 CCT 26 203 MADS-box Gene Family AT4G09960 71.3 7.8e-64 241.1
Cma03g01355 CCT,CST 9 170 MADS-box Gene Family AT4G09960 70.5 1.8e-60 229.9
Cma09g01239 . 1 203 MADS-box Gene Family AT1G71692 58.0 3.8e-57 218.8
Cma08g00942 . 1 229 MADS-box Gene Family AT3G61120 56.3 1.6e-59 226.9
Cma17g01438 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.0e-41 166.8
Cma01g00423 CST 1 173 MADS-box Gene Family AT3G61120 54.3 2.6e-41 166.4
Cma08g00172 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.6e-41 166.4
Cma14g01149 CST 1 173 MADS-box Gene Family AT3G61120 53.2 7.5e-41 164.9
Cma12g00107 . 1 173 MADS-box Gene Family AT3G61120 52.0 4.6e-38 155.6
Cma13g01058 CCT,ECH 1 168 MADS-box Gene Family AT3G61120 51.5 3.0e-37 152.9
Cma18g00020 . 269 436 MADS-box Gene Family AT3G61120 50.9 1.5e-36 150.6
Cma15g01186 CCT,CST 41 246 MADS-box Gene Family AT4G11880 60.7 1.3e-55 213.8
Cma02g01494 CCT,CST 1 204 MADS-box Gene Family AT4G11880 54.9 1.3e-47 187.2
Cma06g01116 CCT 34 243 MADS-box Gene Family AT4G11880 51.4 1.0e-44 177.6
Cma15g01396 CST 1 207 MADS-box Gene Family AT4G11880 53.5 9.5e-43 171.0
Cma02g01025 CST 1 212 MADS-box Gene Family AT4G11880 50.2 9.8e-40 161.0
Cma18g00020 . 1 174 MADS-box Gene Family AT4G11880 51.1 1.6e-37 153.7
Cma01g00242 . 1 235 MADS-box Gene Family AT5G13790 52.4 5.2e-51 198.7
Cma01g01466 CST 51 233 MADS-box Gene Family AT3G57230 58.9 4.6e-39 158.7
Cma01g01466 CST 1 219 MADS-box Gene Family AT2G22630 63.1 2.4e-57 219.5
Cma09g00600 CST 1 220 MADS-box Gene Family AT2G22630 62.3 5.9e-56 214.9
Cma16g00281 . 1 155 MADS-box Gene Family AT2G22630 65.8 2.3e-52 203.0
Cma04g00409 . 1 225 MADS-box Gene Family AT2G22630 56.0 2.6e-51 199.5
Cma03g00854 . 1 155 MADS-box Gene Family AT2G22630 65.8 4.8e-50 195.3
Cma03g00053 . 1 173 MADS-box Gene Family AT3G57390 50.3 3.8e-39 159.1
Cma15g01186 CCT,CST 41 246 MADS-box Gene Family AT4G22950 61.3 2.3e-57 219.5
Cma02g01494 CCT,CST 1 209 MADS-box Gene Family AT4G22950 54.4 1.6e-50 196.8
Cma06g01116 CCT 34 243 MADS-box Gene Family AT4G22950 51.9 3.3e-48 189.1
Cma15g01396 CST 1 207 MADS-box Gene Family AT4G22950 51.4 1.6e-42 170.2
Cma02g01025 CST 1 164 MADS-box Gene Family AT4G22950 56.7 7.5e-40 161.4
Cma14g01149 CST 1 246 MADS-box Gene Family AT5G15800 73.0 3.6e-97 352.1
Cma01g00423 CST 1 246 MADS-box Gene Family AT5G15800 71.1 5.7e-95 344.7
Cma08g00172 . 1 241 MADS-box Gene Family AT5G15800 59.8 2.1e-73 273.1
Cma17g01438 . 1 241 MADS-box Gene Family AT5G15800 58.0 2.2e-70 263.1
Cma18g00020 . 1 225 MADS-box Gene Family AT5G15800 59.0 6.0e-60 228.4
Cma12g00107 . 1 173 MADS-box Gene Family AT5G15800 63.2 2.0e-52 203.4
Cma08g00942 . 1 170 MADS-box Gene Family AT5G15800 63.0 9.5e-50 194.5
Cma13g01058 CCT,ECH 1 172 MADS-box Gene Family AT5G15800 54.7 1.9e-42 170.2
Cma01g00424 CST 74 248 MADS-box Gene Family AT5G15800 53.1 7.3e-42 168.3
Cma15g01186 CCT,CST 41 199 MADS-box Gene Family AT2G45660 64.2 1.2e-47 186.8
Cma06g01116 CCT 34 190 MADS-box Gene Family AT2G45660 64.0 3.3e-45 178.7
Cma02g01494 CCT,CST 1 147 MADS-box Gene Family AT2G45660 62.7 9.5e-45 177.2
Cma14g01999 . 1 136 MADS-box Gene Family AT2G45660 69.1 5.2e-43 171.4
Cma15g01396 CST 1 158 MADS-box Gene Family AT2G45660 61.4 2.0e-42 169.5
Cma02g01025 CST 1 158 MADS-box Gene Family AT2G45660 59.5 9.8e-42 167.2
Cma09g00600 CST 1 232 MADS-box Gene Family AT4G37940 56.4 9.5e-56 214.2
Cma01g01466 CST 1 230 MADS-box Gene Family AT4G37940 58.4 2.1e-55 213.0
Cma16g00281 . 1 156 MADS-box Gene Family AT4G37940 66.7 3.1e-54 209.1
Cma04g00409 . 1 155 MADS-box Gene Family AT4G37940 63.9 2.4e-51 199.5
Cma03g00854 . 1 155 MADS-box Gene Family AT4G37940 66.5 5.4e-51 198.4
Cma03g00842 . 1 223 MADS-box Gene Family AT2G22540 63.0 4.2e-68 255.4
Cma07g00570 . 1 156 MADS-box Gene Family AT2G22540 77.6 8.4e-61 231.1
Cma12g00198 . 1 219 MADS-box Gene Family AT2G22540 53.4 2.2e-53 206.5
Cma07g01190 . 1 153 MADS-box Gene Family AT2G22540 59.0 1.6e-40 163.7
Cma16g00276 . 1 152 MADS-box Gene Family AT2G22540 56.4 8.5e-37 151.4
Cma03g00842 . 1 223 MADS-box Gene Family AT4G24540 56.3 3.4e-56 215.7
Cma12g00198 . 1 219 MADS-box Gene Family AT4G24540 53.1 1.7e-52 203.4
Cma07g00570 . 1 156 MADS-box Gene Family AT4G24540 65.6 2.6e-48 189.5
Cma14g01149 CST 1 171 MADS-box Gene Family AT2G03710 66.9 2.6e-57 219.2
Cma01g00423 CST 1 171 MADS-box Gene Family AT2G03710 66.9 3.4e-57 218.8
Cma08g00172 . 1 176 MADS-box Gene Family AT2G03710 63.8 4.6e-54 208.4
Cma12g00107 . 1 171 MADS-box Gene Family AT2G03710 62.8 1.7e-53 206.5
Cma17g01438 . 1 176 MADS-box Gene Family AT2G03710 62.7 3.0e-53 205.7
Cma18g00020 . 1 173 MADS-box Gene Family AT2G03710 61.0 8.9e-50 194.1
Cma08g00942 . 1 169 MADS-box Gene Family AT2G03710 54.7 3.6e-43 172.2
Cma14g01148 CST 1 173 MADS-box Gene Family AT2G03710 51.7 1.1e-39 160.6
Cma01g00424 CST 74 246 MADS-box Gene Family AT2G03710 50.6 6.6e-37 151.4
Cma07g00020 . 1 169 MADS-box Gene Family AT5G23260 50.3 7.7e-39 158.3
Cma14g01149 CST 1 170 MADS-box Gene Family AT3G02310 86.0 4.5e-76 281.6
Cma01g00423 CST 1 170 MADS-box Gene Family AT3G02310 84.8 2.2e-75 279.3
Cma08g00172 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.7e-67 253.1
Cma17g01438 . 1 172 MADS-box Gene Family AT3G02310 77.9 2.3e-67 252.7
Cma18g00020 . 1 172 MADS-box Gene Family AT3G02310 65.7 1.2e-55 213.8
Cma12g00107 . 1 170 MADS-box Gene Family AT3G02310 62.6 1.5e-50 196.8
Cma08g00942 . 1 168 MADS-box Gene Family AT3G02310 62.6 8.0e-49 191.0
Cma13g01058 CCT,ECH 1 171 MADS-box Gene Family AT3G02310 55.6 1.9e-42 169.9
Cma14g01148 CST 1 172 MADS-box Gene Family AT3G02310 54.7 3.6e-41 165.6
Cma15g01396 CST 1 142 MADS-box Gene Family AT5G62165 69.0 8.9e-48 187.2
Cma02g01025 CST 1 142 MADS-box Gene Family AT5G62165 65.5 7.5e-47 184.1
Cma15g01186 CCT,CST 41 194 MADS-box Gene Family AT5G62165 61.7 2.3e-43 172.6
Cma02g01494 CCT,CST 1 143 MADS-box Gene Family AT5G62165 58.9 6.2e-41 164.5
Cma14g01999 . 1 137 MADS-box Gene Family AT5G62165 59.7 1.1e-37 153.7
Cma16g00281 . 1 142 MADS-box Gene Family AT2G14210 75.5 2.3e-55 213.0
Cma04g00409 . 1 236 MADS-box Gene Family AT2G14210 59.5 5.2e-55 211.8
Cma01g01466 CST 1 142 MADS-box Gene Family AT2G14210 74.8 6.3e-53 204.9
Cma09g00600 CST 1 142 MADS-box Gene Family AT2G14210 74.1 1.4e-52 203.8
Cma03g00854 . 1 142 MADS-box Gene Family AT2G14210 65.0 3.1e-44 176.0
Cma20g00254 . 16 251 MADS-box Gene Family AT2G42830 65.4 1.1e-74 277.3
Cma07g00152 CCT,CST 205 428 MADS-box Gene Family AT2G42830 63.1 3.3e-68 255.8
Cma13g00575 CCT 26 206 MADS-box Gene Family AT2G42830 71.6 1.3e-67 253.8
Cma01g00837 . 1 183 MADS-box Gene Family AT2G42830 70.8 3.6e-67 252.3
Cma03g01355 CCT,CST 7 215 MADS-box Gene Family AT2G42830 58.1 1.5e-60 230.3
Cma08g00942 . 1 226 MADS-box Gene Family AT2G45650 63.5 1.3e-75 280.4
Cma18g00020 . 1 187 MADS-box Gene Family AT2G45650 51.3 2.0e-41 166.8
Cma01g00424 CST 74 242 MADS-box Gene Family AT2G45650 50.9 1.9e-39 160.2
Cma01g00837 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.6e-38 156.0
Cma07g00119 . 49 165 MADS-box Gene Family AT1G29960 53.8 7.4e-37 150.6
Cma13g01058 CCT,ECH 63 237 MADS-box Gene Family AT1G69120 50.8 7.8e-41 164.5
Cma18g00020 . 331 470 MADS-box Gene Family AT1G69120 59.3 1.1e-37 154.1
Cma15g01396 CST 1 142 MADS-box Gene Family AT5G51870 56.8 9.6e-39 157.5
Cma15g01186 CCT,CST 41 187 MADS-box Gene Family AT5G51870 55.1 1.1e-37 154.1
Cma02g01025 CST 1 144 MADS-box Gene Family AT5G51870 54.1 2.4e-37 152.9
Cma02g01494 CCT,CST 1 143 MADS-box Gene Family AT5G51870 54.4 9.0e-37 151.0
Cma18g00020 . 269 508 MADS-box Gene Family AT3G30260 52.0 3.3e-52 202.6
Cma14g01148 CST 1 237 MADS-box Gene Family AT3G30260 50.8 4.3e-52 202.2
Cma01g00424 CST 74 289 MADS-box Gene Family AT3G30260 52.5 2.9e-48 189.5
Cma12g00108 . 1 162 MADS-box Gene Family AT3G30260 59.9 3.1e-42 169.5
Cma13g01058 CCT,ECH 63 239 MADS-box Gene Family AT5G60910 53.1 3.3e-41 165.6
Cma18g00020 . 331 443 MADS-box Gene Family AT5G60910 69.0 3.7e-37 152.1
Cma08g00172 . 1 242 MADS-box Gene Family AT1G24260 73.3 4.7e-88 321.6
Cma17g01438 . 1 242 MADS-box Gene Family AT1G24260 70.9 2.4e-84 309.3
Cma01g00423 CST 1 245 MADS-box Gene Family AT1G24260 60.4 5.7e-70 261.5
Cma14g01149 CST 1 245 MADS-box Gene Family AT1G24260 59.0 3.1e-68 255.8
Cma18g00020 . 1 226 MADS-box Gene Family AT1G24260 51.7 8.6e-50 194.5
Cma08g00942 . 1 234 MADS-box Gene Family AT1G24260 52.2 1.5e-49 193.7
Cma12g00107 . 1 156 MADS-box Gene Family AT1G24260 60.6 7.1e-44 174.9
Cma14g01148 CST 1 158 MADS-box Gene Family AT1G24260 56.3 2.1e-40 163.3
Cma13g01058 CCT,ECH 1 157 MADS-box Gene Family AT1G24260 54.3 6.2e-40 161.8
Cma01g00424 CST 74 231 MADS-box Gene Family AT1G24260 53.8 5.2e-39 158.7
Cma12g00108 . 1 152 MADS-box Gene Family AT1G24260 52.9 3.8e-37 152.5
Cma01g01941 CST 1 231 MADS-box Gene Family AT3G54340 60.3 8.1e-69 257.7
Cma09g00125 CST 1 241 MADS-box Gene Family AT3G54340 57.6 1.1e-68 257.3
Cma01g01365 CST 22 160 MADS-box Gene Family AT5G20240 71.9 1.1e-53 206.8
Cma09g00768 CST 1 139 MADS-box Gene Family AT5G20240 70.5 3.4e-52 201.8
Cma01g01365 CST 22 160 MADS-box Gene Family AT5G20240 71.9 1.1e-53 206.8
Cma09g00768 CST 1 139 MADS-box Gene Family AT5G20240 70.5 3.4e-52 201.8
Cma01g01941 CST 1 231 MADS-box Gene Family AT3G54340 60.3 8.1e-69 257.7
Cma09g00125 CST 1 241 MADS-box Gene Family AT3G54340 57.6 1.1e-68 257.3
Cma20g00254 . 16 251 MADS-box Gene Family AT3G58780 67.8 1.7e-80 296.6
Cma07g00152 CCT,CST 205 428 MADS-box Gene Family AT3G58780 64.0 4.1e-74 275.4
Cma13g00575 CCT 15 211 MADS-box Gene Family AT3G58780 66.5 1.0e-69 260.8
Cma01g00837 . 1 189 MADS-box Gene Family AT3G58780 70.4 4.0e-69 258.8
Cma03g01355 CCT,CST 7 215 MADS-box Gene Family AT3G58780 58.5 6.6e-64 241.5
Cma14g01149 CST 1 246 MADS-box Gene Family AT5G15800 73.0 3.6e-97 352.1
Cma01g00423 CST 1 246 MADS-box Gene Family AT5G15800 71.1 5.7e-95 344.7
Cma08g00172 . 1 241 MADS-box Gene Family AT5G15800 59.8 2.1e-73 273.1
Cma17g01438 . 1 241 MADS-box Gene Family AT5G15800 58.0 2.2e-70 263.1
Cma18g00020 . 1 225 MADS-box Gene Family AT5G15800 59.0 6.0e-60 228.4
Cma12g00107 . 1 173 MADS-box Gene Family AT5G15800 63.2 2.0e-52 203.4
Cma08g00942 . 1 170 MADS-box Gene Family AT5G15800 63.0 9.5e-50 194.5
Cma13g01058 CCT,ECH 1 172 MADS-box Gene Family AT5G15800 54.7 1.9e-42 170.2
Cma01g00424 CST 74 248 MADS-box Gene Family AT5G15800 53.1 7.3e-42 168.3
Cma14g01149 CST 1 171 MADS-box Gene Family AT2G03710 66.9 2.6e-57 219.2
Cma01g00423 CST 1 171 MADS-box Gene Family AT2G03710 66.9 3.4e-57 218.8
Cma08g00172 . 1 176 MADS-box Gene Family AT2G03710 63.8 4.6e-54 208.4
Cma12g00107 . 1 171 MADS-box Gene Family AT2G03710 62.8 1.7e-53 206.5
Cma17g01438 . 1 176 MADS-box Gene Family AT2G03710 62.7 3.0e-53 205.7
Cma18g00020 . 1 173 MADS-box Gene Family AT2G03710 61.0 8.9e-50 194.1
Cma08g00942 . 1 169 MADS-box Gene Family AT2G03710 54.7 3.6e-43 172.2
Cma14g01148 CST 1 173 MADS-box Gene Family AT2G03710 51.7 1.1e-39 160.6
Cma01g00424 CST 74 246 MADS-box Gene Family AT2G03710 50.6 6.6e-37 151.4
Cma14g01149 CST 1 170 MADS-box Gene Family AT3G02310 86.0 4.5e-76 281.6
Cma01g00423 CST 1 170 MADS-box Gene Family AT3G02310 84.8 2.2e-75 279.3
Cma08g00172 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.7e-67 253.1
Cma17g01438 . 1 172 MADS-box Gene Family AT3G02310 77.9 2.3e-67 252.7
Cma18g00020 . 1 172 MADS-box Gene Family AT3G02310 65.7 1.2e-55 213.8
Cma12g00107 . 1 170 MADS-box Gene Family AT3G02310 62.6 1.5e-50 196.8
Cma08g00942 . 1 168 MADS-box Gene Family AT3G02310 62.6 8.0e-49 191.0
Cma13g01058 CCT,ECH 1 171 MADS-box Gene Family AT3G02310 55.6 1.9e-42 169.9
Cma14g01148 CST 1 172 MADS-box Gene Family AT3G02310 54.7 3.6e-41 165.6
Cma20g00254 . 16 251 MADS-box Gene Family AT2G42830 65.4 1.1e-74 277.3
Cma07g00152 CCT,CST 205 428 MADS-box Gene Family AT2G42830 63.1 3.3e-68 255.8
Cma13g00575 CCT 26 206 MADS-box Gene Family AT2G42830 71.6 1.3e-67 253.8
Cma01g00837 . 1 183 MADS-box Gene Family AT2G42830 70.8 3.6e-67 252.3
Cma03g01355 CCT,CST 7 215 MADS-box Gene Family AT2G42830 58.1 1.5e-60 230.3
Cma08g00942 . 1 226 MADS-box Gene Family AT2G45650 63.5 1.3e-75 280.4
Cma18g00020 . 1 187 MADS-box Gene Family AT2G45650 51.3 2.0e-41 166.8
Cma01g00424 CST 74 242 MADS-box Gene Family AT2G45650 50.9 1.9e-39 160.2
Cma01g00837 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.6e-38 156.0
Cma13g01058 CCT,ECH 63 237 MADS-box Gene Family AT1G69120 50.8 7.8e-41 164.5
Cma18g00020 . 331 470 MADS-box Gene Family AT1G69120 59.3 1.1e-37 154.1
Cma13g01058 CCT,ECH 63 239 MADS-box Gene Family AT5G60910 53.1 3.3e-41 165.6
Cma18g00020 . 331 443 MADS-box Gene Family AT5G60910 69.0 3.7e-37 152.1
Cma08g00172 . 1 242 MADS-box Gene Family AT1G24260 73.3 4.7e-88 321.6
Cma17g01438 . 1 242 MADS-box Gene Family AT1G24260 70.9 2.4e-84 309.3
Cma01g00423 CST 1 245 MADS-box Gene Family AT1G24260 60.4 5.7e-70 261.5
Cma14g01149 CST 1 245 MADS-box Gene Family AT1G24260 59.0 3.1e-68 255.8
Cma18g00020 . 1 226 MADS-box Gene Family AT1G24260 51.7 8.6e-50 194.5
Cma08g00942 . 1 234 MADS-box Gene Family AT1G24260 52.2 1.5e-49 193.7
Cma12g00107 . 1 156 MADS-box Gene Family AT1G24260 60.6 7.1e-44 174.9
Cma14g01148 CST 1 158 MADS-box Gene Family AT1G24260 56.3 2.1e-40 163.3
Cma13g01058 CCT,ECH 1 157 MADS-box Gene Family AT1G24260 54.3 6.2e-40 161.8
Cma01g00424 CST 74 231 MADS-box Gene Family AT1G24260 53.8 5.2e-39 158.7
Cma12g00108 . 1 152 MADS-box Gene Family AT1G24260 52.9 3.8e-37 152.5
Cma13g01058 CCT,ECH 1 205 MADS-box Gene Family AT1G26310 64.3 7.5e-68 254.6
Cma18g00020 . 269 483 MADS-box Gene Family AT1G26310 62.0 1.2e-65 247.3
Cma14g01148 CST 1 229 MADS-box Gene Family AT1G26310 54.5 6.8e-61 231.5
Cma12g00108 . 1 164 MADS-box Gene Family AT1G26310 66.9 6.4e-59 224.9
Cma01g00424 CST 74 253 MADS-box Gene Family AT1G26310 63.5 3.9e-56 215.7
Cma01g00423 CST 1 196 MADS-box Gene Family AT1G26310 51.7 2.2e-43 173.3
Cma12g00107 . 1 173 MADS-box Gene Family AT1G26310 55.1 6.4e-43 171.8
Cma08g00942 . 1 158 MADS-box Gene Family AT1G26310 58.5 5.4e-42 168.7
Cma01g00837 . 1 237 MADS-box Gene Family AT4G09960 66.2 1.7e-74 276.6
Cma07g00152 CCT,CST 207 397 MADS-box Gene Family AT4G09960 67.7 2.4e-65 246.1
Cma20g00254 . 22 201 MADS-box Gene Family AT4G09960 70.6 2.7e-64 242.7
Cma13g00575 CCT 26 203 MADS-box Gene Family AT4G09960 71.3 7.8e-64 241.1
Cma03g01355 CCT,CST 9 170 MADS-box Gene Family AT4G09960 70.5 1.8e-60 229.9
Cma09g01239 . 1 203 MADS-box Gene Family AT1G71692 58.0 3.8e-57 218.8
Cma08g00942 . 1 229 MADS-box Gene Family AT3G61120 56.3 1.6e-59 226.9
Cma17g01438 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.0e-41 166.8
Cma01g00423 CST 1 173 MADS-box Gene Family AT3G61120 54.3 2.6e-41 166.4
Cma08g00172 . 1 170 MADS-box Gene Family AT3G61120 55.8 2.6e-41 166.4
Cma14g01149 CST 1 173 MADS-box Gene Family AT3G61120 53.2 7.5e-41 164.9
Cma12g00107 . 1 173 MADS-box Gene Family AT3G61120 52.0 4.6e-38 155.6
Cma13g01058 CCT,ECH 1 168 MADS-box Gene Family AT3G61120 51.5 3.0e-37 152.9
Cma18g00020 . 269 436 MADS-box Gene Family AT3G61120 50.9 1.5e-36 150.6
Cma15g01186 CCT,CST 41 246 MADS-box Gene Family AT4G11880 60.7 1.3e-55 213.8
Cma02g01494 CCT,CST 1 204 MADS-box Gene Family AT4G11880 54.9 1.3e-47 187.2
Cma06g01116 CCT 34 243 MADS-box Gene Family AT4G11880 51.4 1.0e-44 177.6
Cma15g01396 CST 1 207 MADS-box Gene Family AT4G11880 53.5 9.5e-43 171.0
Cma02g01025 CST 1 212 MADS-box Gene Family AT4G11880 50.2 9.8e-40 161.0
Cma18g00020 . 1 174 MADS-box Gene Family AT4G11880 51.1 1.6e-37 153.7
Cma01g00242 . 1 235 MADS-box Gene Family AT5G13790 52.4 5.2e-51 198.7
Cma01g01466 CST 51 233 MADS-box Gene Family AT3G57230 58.9 4.6e-39 158.7
Cma01g01466 CST 1 219 MADS-box Gene Family AT2G22630 63.1 2.4e-57 219.5
Cma09g00600 CST 1 220 MADS-box Gene Family AT2G22630 62.3 5.9e-56 214.9
Cma16g00281 . 1 155 MADS-box Gene Family AT2G22630 65.8 2.3e-52 203.0
Cma04g00409 . 1 225 MADS-box Gene Family AT2G22630 56.0 2.6e-51 199.5
Cma03g00854 . 1 155 MADS-box Gene Family AT2G22630 65.8 4.8e-50 195.3
Cma03g00053 . 1 173 MADS-box Gene Family AT3G57390 50.3 3.8e-39 159.1
Cma15g01186 CCT,CST 41 246 MADS-box Gene Family AT4G22950 61.3 2.3e-57 219.5
Cma02g01494 CCT,CST 1 209 MADS-box Gene Family AT4G22950 54.4 1.6e-50 196.8
Cma06g01116 CCT 34 243 MADS-box Gene Family AT4G22950 51.9 3.3e-48 189.1
Cma15g01396 CST 1 207 MADS-box Gene Family AT4G22950 51.4 1.6e-42 170.2
Cma02g01025 CST 1 164 MADS-box Gene Family AT4G22950 56.7 7.5e-40 161.4
Cma15g01186 CCT,CST 41 199 MADS-box Gene Family AT2G45660 64.2 1.2e-47 186.8
Cma06g01116 CCT 34 190 MADS-box Gene Family AT2G45660 64.0 3.3e-45 178.7
Cma02g01494 CCT,CST 1 147 MADS-box Gene Family AT2G45660 62.7 9.5e-45 177.2
Cma14g01999 . 1 136 MADS-box Gene Family AT2G45660 69.1 5.2e-43 171.4
Cma15g01396 CST 1 158 MADS-box Gene Family AT2G45660 61.4 2.0e-42 169.5
Cma02g01025 CST 1 158 MADS-box Gene Family AT2G45660 59.5 9.8e-42 167.2
Cma09g00600 CST 1 232 MADS-box Gene Family AT4G37940 56.4 9.5e-56 214.2
Cma01g01466 CST 1 230 MADS-box Gene Family AT4G37940 58.4 2.1e-55 213.0
Cma16g00281 . 1 156 MADS-box Gene Family AT4G37940 66.7 3.1e-54 209.1
Cma04g00409 . 1 155 MADS-box Gene Family AT4G37940 63.9 2.4e-51 199.5
Cma03g00854 . 1 155 MADS-box Gene Family AT4G37940 66.5 5.4e-51 198.4
Cma03g00842 . 1 223 MADS-box Gene Family AT2G22540 63.0 4.2e-68 255.4
Cma07g00570 . 1 156 MADS-box Gene Family AT2G22540 77.6 8.4e-61 231.1
Cma12g00198 . 1 219 MADS-box Gene Family AT2G22540 53.4 2.2e-53 206.5
Cma07g01190 . 1 153 MADS-box Gene Family AT2G22540 59.0 1.6e-40 163.7
Cma16g00276 . 1 152 MADS-box Gene Family AT2G22540 56.4 8.5e-37 151.4
Cma03g00842 . 1 223 MADS-box Gene Family AT4G24540 56.3 3.4e-56 215.7
Cma12g00198 . 1 219 MADS-box Gene Family AT4G24540 53.1 1.7e-52 203.4
Cma07g00570 . 1 156 MADS-box Gene Family AT4G24540 65.6 2.6e-48 189.5
Cma07g00020 . 1 169 MADS-box Gene Family AT5G23260 50.3 7.7e-39 158.3
Cma15g01396 CST 1 142 MADS-box Gene Family AT5G62165 69.0 8.9e-48 187.2
Cma02g01025 CST 1 142 MADS-box Gene Family AT5G62165 65.5 7.5e-47 184.1
Cma15g01186 CCT,CST 41 194 MADS-box Gene Family AT5G62165 61.7 2.3e-43 172.6
Cma02g01494 CCT,CST 1 143 MADS-box Gene Family AT5G62165 58.9 6.2e-41 164.5
Cma14g01999 . 1 137 MADS-box Gene Family AT5G62165 59.7 1.1e-37 153.7
Cma16g00281 . 1 142 MADS-box Gene Family AT2G14210 75.5 2.3e-55 213.0
Cma04g00409 . 1 236 MADS-box Gene Family AT2G14210 59.5 5.2e-55 211.8
Cma01g01466 CST 1 142 MADS-box Gene Family AT2G14210 74.8 6.3e-53 204.9
Cma09g00600 CST 1 142 MADS-box Gene Family AT2G14210 74.1 1.4e-52 203.8
Cma03g00854 . 1 142 MADS-box Gene Family AT2G14210 65.0 3.1e-44 176.0
Cma07g00119 . 49 165 MADS-box Gene Family AT1G29960 53.8 7.4e-37 150.6
Cma15g01396 CST 1 142 MADS-box Gene Family AT5G51870 56.8 9.6e-39 157.5
Cma15g01186 CCT,CST 41 187 MADS-box Gene Family AT5G51870 55.1 1.1e-37 154.1
Cma02g01025 CST 1 144 MADS-box Gene Family AT5G51870 54.1 2.4e-37 152.9
Cma02g01494 CCT,CST 1 143 MADS-box Gene Family AT5G51870 54.4 9.0e-37 151.0
Cma18g00020 . 269 508 MADS-box Gene Family AT3G30260 52.0 3.3e-52 202.6
Cma14g01148 CST 1 237 MADS-box Gene Family AT3G30260 50.8 4.3e-52 202.2
Cma01g00424 CST 74 289 MADS-box Gene Family AT3G30260 52.5 2.9e-48 189.5
Cma12g00108 . 1 162 MADS-box Gene Family AT3G30260 59.9 3.1e-42 169.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000605 4 3 4 7 5 3 4 3 3 2 2 3 4 3 3 5 3 1 5 3 2 3 3 3 3 2 3 6 4 4 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36144 PF00582 Usp 1.40E-17 CL0039 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01058 Cma_Chr13 FPKM 5.404328 5.572928 15.525349 15.980024 18.277813 19.980879 17.630854 17.705944 18.774149 16.494089