Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01058 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATTAATATGCAAGTCACCTTCTCCAAGAGAAGGTCTGGTCTGCTGAAGAAGGCTCATGAGATTTCAGTTCTGTGCGATGCTGAGGTTGCTCTTATCGTCTTCTCCACCAAGGGCAAGCTGTTTGAATACTCCACTGACTCATGCATGGAGAAGATCCTTGAGCGTTATGAAAGGTACTCGTACGCAGAGAGGCGGCTTGTTGCGAATGATAGCCAATCAAACGGAAATTGGACTCTTGAATATGCAAAGCTTAAAGCCAGAATAGAGGTTCTTCAGAAGAACCACAGGCATTTCATGGGGGAAGATCTTGAGTCCTTGAGTCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCGCTCAAGCATGTAAGAGCCAGGAAGAACCAACTCATGCATGAATCCATTTCAGATCTTCAGAAAAAGGACAAGGCGCTTCAGGACCAAAATAACATGTTAGCCAAGAAGATAAGGGAGAAGGAGAAAGCACAAGCTCAAAATCCACAAATGGAGCAGCAGCATAGCCATGCCATTGAACCTTCTCCACTTCTTCTTCCTCAGCCATTCCAATCTCTTAACATGCCTTGTCCTTACCCAACACACGCCACCGGACACGAAGAATCCGCCGCCAACCACGACAGATCCGGCACCCTCCTGCCGCCCTGGATGCTCGGCCACCACCTTGAGGGAGCTGAAGTTTGTTTGGTCTCTGTTTTCATGGCTTGTTTCTGGGTTTGTTCTAGGCCACAACACAAAAAACCCATCTCAGATTCTGTGGAAAATGTCCAAAAGAAGGAGCTTTTAGGAAGTGTTGTTAGTGGGGAAGAAGAGTTCAGCTCTGATAGCTCCAAAGCTTCGTCTGAAAATGGAAACAGAGTAATGGTGGTTGTGGATTGGAGCGTTGAGGCTGAAGGGGCTTTGGAATGGACACTCTCTCATGCTGTTCGGAGCCATGACACCATTGTTCTTGTTAATGTTCTCAAGAGTTTGAAGCCTCGAGGTTTTGAGTTTGGGAATAAGGTGAATTCCACAAAGGAGGCCTATAAGCTTCTGTTTTCTATGAGAAACATGTGCTTAAAGAGAAGGCCTGAGGTGCAAGTAGAGATGGCATTACTAGAAGGGAAAGAAAGAGGTCCAATAATTGTGGAAGAAGCTAAGAAGCATAAACTCTCTCTTTTGGTACTTGGTCAAAGAAAGAGGCCGATCCTTCGGCGTCTATTGAAAAGATGGGCGACAGGACGCTATCGAAGGAGAAGGAAGAAGAAGAGTTGTCGAGCAACGGCGGAGTATTGCATTCAGAACTCCTCTTGCATGACCATTGCAGTGAGGAAGAAGAGCAAAAAGATTGGAGGATATTTGATCACGACCAAACGTCACAAGAACTTCTGGCTCTTGGCTTGA 1446 45.78 MGRGRVQLKRIENKINMQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDSQSNGNWTLEYAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHVRARKNQLMHESISDLQKKDKALQDQNNMLAKKIREKEKAQAQNPQMEQQHSHAIEPSPLLLPQPFQSLNMPCPYPTHATGHEESAANHDRSGTLLPPWMLGHHLEGAEVCLVSVFMACFWVCSRPQHKKPISDSVENVQKKELLGSVVSGEEEFSSDSSKASSENGNRVMVVVDWSVEAEGALEWTLSHAVRSHDTIVLVNVLKSLKPRGFEFGNKVNSTKEAYKLLFSMRNMCLKRRPEVQVEMALLEGKERGPIIVEEAKKHKLSLLVLGQRKRPILRRLLKRWATGRYRRRRKKKSCRATAEYCIQNSSCMTIAVRKKSKKIGGYLITTKRHKNFWLLA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8032668 8037903 - CmaCh13G010580.1 Cma13g01058 306885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01058 481 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma13g01058 481 CDD USP_Like 307 457 - -
Cma13g01058 481 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 Coils Coil 88 108 - -
Cma13g01058 481 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cma13g01058 481 Gene3D HUPs 306 466 IPR014729 -
Cma13g01058 481 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma13g01058 481 MobiDBLite consensus disorder prediction 209 229 - -
Cma13g01058 481 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 261 481 - -
Cma13g01058 481 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 306 459 - -
Cma13g01058 481 Coils Coil 151 188 - -
Cma13g01058 481 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma13g01058 481 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cma13g01058 481 Pfam Universal stress protein family 307 458 IPR006016 -
Cma13g01058 481 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma13g01058 481 Coils Coil 122 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00224 Cma13g01058 CCT
Cma11g00224 Cma13g01058 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02358 Cma-Chr4:16356214 Cma13g01058 Cma-Chr13:8032668 2.56E-25 dispersed
Cma06g01288 Cma-Chr6:8566579 Cma13g01058 Cma-Chr13:8032668 2.14E-19 dispersed
Cma13g01058 Cma-Chr13:8032668 Cma14g01149 Cma-Chr14:9050926 1.12E-55 dispersed
Cma14g01848 Cma-Chr14:13162165 Cma13g01058 Cma-Chr13:8032668 4.73E-17 dispersed
Cma15g00682 Cma-Chr15:3263758 Cma13g01058 Cma-Chr13:8032668 1.35E-23 dispersed
Cma12g00108 Cma-Chr12:442992 Cma13g01058 Cma-Chr13:8032668 4.53E-85 transposed
Cma01g00423 Cma-Chr1:2127490 Cma13g01058 Cma-Chr13:8032668 3.73E-56 wgd
Cma11g00224 Cma-Chr11:1122547 Cma13g01058 Cma-Chr13:8032668 1.23E-55 wgd
Cma13g01058 Cma-Chr13:8032668 Cma14g01148 Cma-Chr14:9009460 3.48E-88 wgd
Cma13g01058 Cma-Chr13:8032668 Cma18g01096 Cma-Chr18:8982094 1.29E-54 wgd
Cma13g01058 Cma-Chr13:8032668 Cma18g00020 Cma-Chr18:80281 6.05E-49 wgd
Cma13g01058 Cma-Chr13:8032668 Cma04g01711 Cma-Chr4:8609437 6.84E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36144 PF00582 Usp 1.40E-17 CL0039 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01058 K09264 - csv:101207225 395.971