Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01074 ATGGAAGTTACAGGGAAATCTAGTTTCAATTTCGGAGCTTGCGAGAAGCCAAACTACCGGCTAACCGAGACCAAGTCAAAACTCGTGAAATTTGTTCTGTTTGCAGTACCGACCGATTTGTTATACTTGGCTACTAGGTTGGGAAATATGAGTATGGGGGACTGCGAATCAATTATACCAACCTCTGAAGGAGAGCAGCATGTCATAGCTGCATTTCAGCACCTAGCCAAGTTATTAAGAACAAGCCAGAACGTGAATGATGAATTGAAAAGGCTCCTTACCGATCTTGATTCTCATTTGACTTCCATGACTCTGTATACTCATTTACAGGATGGGAAGTTGAATGAGCTAGAATCGAGATTCAAATCTGCTGAGGAGAAGATTAGGAGATGGGAATCTAACGAATCCATGATATGGGATTCTGGACCCAAGGAAGCTTGTGAATATATGAAGGCTGTTGATGAAATTCATAAAGTTCAGGAAGGTCTAATAAGTCTGCCAGTAAATGACGGTAGGAAGCAAAAGGATCTTCTTTGCCAAGCTGAGTCTGTCATACAGTTCGCAATGGCAAGGCTAGAGCAGGAACTAGTCCATATTCTTGCACAAAACAAACTATATTTTGAGCCCAACTGTGTTCCCTTCCAGTCTGGTGGGTATGATGCTGTCTATAACGAGTCCTTTGCTTCAGTTGAGGACAGTTTGGAGGAGGAAACTTCCCAGAGAGAGAGTATTCCTGCTGTATGTATAGTAAACATGGTCCATCCACACGTGATCCCTCATCTTAAATCCATCGCAAATGCTATGTTTACTTCAAATTATATTCAGGAATTCTCCCTGGCTTTTGTTATAATGCGGAAAGATGCGTTGGATGAGTATTTGCTCATTCTCGAAATGGAGAGGCATAGCATCGGTGATTTGCAGACCATGGAGTGGGATGTCTTAAACGTGAAAATCAAGAAATGGATTTGGCTAATTAAAGTTGTTATTCGAGTCTACCTTGCTAGTGAACAAAGACTTTGTAACAATATATTTGAAGGCTTTGGATCTTATAGTGCAACCTGTTTTGCTGAAATTTCAGCAACTTCTATGCTCTGCCTATTGAATTTTGGCGAGGCCATAGCTATGACAACTCGTCGACCGGAAAAGCTGTTTCGCTTGCTTGACATGTACGAGGTCCTGGAAAATCTTCTTGTGGATATCGGTGCATTATTTTCAGAAGATACAGAAATGGGTTCTTTTCTCAAAGCTGAGTTCCATAATCTTTTCATGAAATTAAGTGATTCTGCAAGGGCCACGTTTGTAGATTTTGGAAGTCTCATCGCACGTTCCATATCAACAAGCCCTTTTCCGGGTGGTGGTGTTCATCATCTCACTAAGTATGTTATGAACTACACTAGGACCCTCACTGTCTACAGAGACTCCCTTGTTTTCCTTCTCCGAGATGAAGCAGCAGATAGCTTAGGTCCAGCTTCTGAGCTGCTGAACGAAATCAATAGTATGCCTTGCCCATTGGCTTTCCACCTTCAGTCGATCACTTCACAGTTAATATCCAATCTGAACAACAAATCCAAGTTGTACAATGATGATGCTCTACGACATATTTTTTTAATGAATAACATTCATTATATGATTCAAAAGGTTAAAGGCTCTGAACTCAGAGCCTTTTTTGGAGGTGAGTGGATACGAGAACATAACAGAATGTTACAGAGCCACGCCAACATCTATATGAGAGTCACCTGGCAGTCGGTTATTTCTCTGCTCAGGCTTGATGGTGATGAAACCAACACTCCGAAGGCAGTTTTTAAAGAAAAGTATAGGGCCTTCAATGTAGCTTTTGAGGAGATATATAAGAACCAAACTGGATGGAATGTCTCAGATCCTGAACTACGTGATGACTTGCACATTCTAACATCAAATTGTGTAATTCAAGCATATCGATTCCTCTGCAACTTAAAGTCTCAATTTAACTGTGAAAGGTACATCAAATATACCATCGATGATCTGAGCAAGCATATACTGGATCTCTTTCAAGGCTCACCGGATTCGTTGCAAAGTTCACGCCGGAGATGA 2070 41.16 MEVTGKSSFNFGACEKPNYRLTETKSKLVKFVLFAVPTDLLYLATRLGNMSMGDCESIIPTSEGEQHVIAAFQHLAKLLRTSQNVNDELKRLLTDLDSHLTSMTLYTHLQDGKLNELESRFKSAEEKIRRWESNESMIWDSGPKEACEYMKAVDEIHKVQEGLISLPVNDGRKQKDLLCQAESVIQFAMARLEQELVHILAQNKLYFEPNCVPFQSGGYDAVYNESFASVEDSLEEETSQRESIPAVCIVNMVHPHVIPHLKSIANAMFTSNYIQEFSLAFVIMRKDALDEYLLILEMERHSIGDLQTMEWDVLNVKIKKWIWLIKVVIRVYLASEQRLCNNIFEGFGSYSATCFAEISATSMLCLLNFGEAIAMTTRRPEKLFRLLDMYEVLENLLVDIGALFSEDTEMGSFLKAEFHNLFMKLSDSARATFVDFGSLIARSISTSPFPGGGVHHLTKYVMNYTRTLTVYRDSLVFLLRDEAADSLGPASELLNEINSMPCPLAFHLQSITSQLISNLNNKSKLYNDDALRHIFLMNNIHYMIQKVKGSELRAFFGGEWIREHNRMLQSHANIYMRVTWQSVISLLRLDGDETNTPKAVFKEKYRAFNVAFEEIYKNQTGWNVSDPELRDDLHILTSNCVIQAYRFLCNLKSQFNCERYIKYTIDDLSKHILDLFQGSPDSLQSSRRR 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8116481 8119619 - CmaCh13G010740.1 Cma13g01074 306901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01074 689 Pfam Exo70 exocyst complex subunit 319 673 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma13g01074 689 Coils Coil 75 95 - -
Cma13g01074 689 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 74 683 - -
Cma13g01074 689 Coils Coil 114 134 - -
Cma13g01074 689 SUPERFAMILY Cullin repeat-like 134 676 IPR016159 -
Cma13g01074 689 Gene3D Exocyst complex component Exo70 126 686 - -
Cma13g01074 689 PANTHER EXOCYST COMPLEX PROTEIN EXO70 74 683 IPR004140 GO:0000145|GO:0006887
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00035 Cma13g01074 CCT
Cma11g00035 Cma13g01074 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00449 Cma-Chr1:2254957 Cma13g01074 Cma-Chr13:8116481 7.81E-152 dispersed
Cma13g01074 Cma-Chr13:8116481 Cma18g00319 Cma-Chr18:1702191 2.21E-123 dispersed
Cma13g01074 Cma-Chr13:8116481 Cma13g00803 Cma-Chr13:6823642 1.52E-127 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01074 K07195 - csv:101202747 985.711