Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01419 ATGGAAAACCCATTTCCATCCAAGGAGGAAGGGATGGGGTATTGGGGGCCTTCCAGAACTCAGGCCGATGCTCTGACTTTTACTGACGCTGGAATGAGGATTCCTAGTCCTGAAGATGTGCTCCACAGCATCTCAGAGCTGATGAGTTTTGATTCTTATGCAGGATGGGGCAACAACTGTGCAGTAATGGATCCGGTTTTCACCTCTTGTGGAATTTCGTCGATTCCACCAACGAGTACTTGCCCTTCTATGGAGGGCTCAACTTTCCCAGAAGGGGGGAGCCATGAAATACTTACTTTGAATGAACTTGGTGGAGCTTCCATTTCCGTGGTGAATTCTTTTACCTGTGGAGATGAGGTTATGTTTCAGCAGCCAGATACTGAATTTGGGGTATCTGATGTTTCGGACAACACAAATGAATCAGGTTCGAATTCAAATAACGTCCAAGACATGGATAGTTGTCTGATTTCTAGGCCGATTGGTTGGTCACTTGATGAGAGAATGCTGAGGGCATTGTCCTTGTTTAAAGAGTCTTCACCCGGAGGTATTTTGGCTCAAGTCTGGGTGCCTATGAAGCATGGAAACCAATTCTTCCTGAGCACCACTGATCAGCCGTATTTGCTCGATCAAATGCTCACTGGGTACCGTGAAGTGTCGAGGTGGTATACATTCTCTGCGGAAGGGAAACTGGGTTCTCTCCTTGGACTTCCTGGTCGTGTTTTCAATTCCAAAATTCCAGAATGGACATCAAATGTTAGATATTACAGTGACGCTGAGTATCTGAGAATGGAACACGCAATTGGTCACGAGGTTTATGGATCAATTGCCTTACCAATATTCAGTAATGAACTTGAAAGGTCATGCTGTGCCGTACTTGAAGTTGTTACGACAAAGGAGAAGCCCAATTTTGATGCAGAGATTGACATTGTTTCCCGAGCGCTGGAGATTGTTAGCTTGAGAACTATTGCACCGCCTCGACTATATCCTCAGTGTTTGAAGCAGAACCAGAGATCTGTATTAGCAGAGATAACAGATGTGCTACGCGCTGTATGTCATGCACATAGGCTACCTCTGGCACTCACCTGGATTCCTTGCTGTTATACCATGCAAGCTGTTGATGAGGCTGCTAGAGTTCGTGTGAAGGAGAACGACGTCAGCCCAAAGGGGAAATCTGTATTATGCATTGAGGAAACAGCATGTTATGTGAATGACAAAGCAACTCAAGGATTTGTGCATGCGTGTACGGAACATCATCTTGAAGAAGGACAAGGGATAGTTGGGAAAGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATAATATTAATGAGTATCCGCTGGTCCATCATGCACGCAAGTTTGGTTTGAATGCTGCTGTTGCAATCAGGCTGAGAAGCACATACACTGGTGCTGATGATTATATACTCGAATTCTTTCTACCTGTCAATATGAAAGGAAGCTCAGAACAGCAACTTTTATTGAACAATCTCTCTGGTACCATGCAAAGAATGTGCCGGAGCTTGAGAACAGTTTCAAAGGACGAATTATTGGGGGCCAAGGATCCTGATGCTGGATTCCAGAGTGGAATGGTCGGTAAGTCTGCAACTACGTCCAGGAGAAACTCACAGTCTACGGTTACAGACAGTGAAACAAGGGTATCTAACTCGATAAATGATGGAACTAAAGCGGAATGCCCTAAGAAGCAGCAGACGACTAATGGTACACGGAGGCAGGCGGACAAAAAACGTAGCACAGCTGAAAAAAACGTGAGCTTTAGTGTTCTTCAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCGAAGAGCATTGGTGTTTGCCCAACAACCCTGAAAAGAATATGCAGACAACATGGGATTCTGAGGTGGCCGTCCCGTAAAATAAACAAGGTAAACCGTTCGCTAGGGAAAATACAGACGGTTCTCGATTCTGTGAAGGGGGTGGAGTGTAGACTGAAGTTTGATCCAACGACAGGGGGTCTTATGGCAGCCGGTTCTCTTATTCCAGAGCTCAATGGGCAGAACAGTCCTCTCTTCTCTGATAATAATCCATCTATAATAAACCTCAAGCCGTTACCTCGGGATGTAAATTCAGTTCCTTCTATCCCTTTCGATAGTCAGAACCCCACTGTGAAGTTGGAAATGGATGACCAAAGAAACTCGTCGAGGAGTGTTCTTATTCCTGAGAAGGAACCCAGTGTTTGCCAGCTTGATTGTGGTGAAGGTTCAAAGTCCACTGGGTTAGATGCTGCATCATGCCAGCTTTCTGGCCTGGATGTGATGGATTGGGATGTCCCAGGGAATGCCGCAGGTTGTATTACTGCTAAAAAAGGCAACGGATTGGATTTTGTTGAGAATAATTTGAGGTCATGCTCTTTTGGGGCTGCCAACGGGGTGGGAACCATGTGGGAAGGCAGCGATGGAATGAATGAACATTACCAGCCAACTACTTCAAGCATGACGGACTCATCAAATGGCTCTGGCTTATTGATCCACGGGAGTTCGTCCAGCGGTCAGAGCGTCGAGGAGAGGAAGCATTTGCAAGAAAAAACTAGCTGTGTTGACAGTGATTCAAAGATCGTTGTAAAAGCTTCATACAAAGAAGACACGGTTCGATTCAAGTTTGATCCGTCTTTAGGATATCTCCAGCTCTACGAAGAAGTTGGCAAGAGATTCAAGTTAAACCAGGGGACATTCCAGCTCAAATACCTCGACGACGAAAAAGAATGGGTAATGCTAGTTAGCAATTCAGACATGCAGGAATGTCTTGAGGTGATGGACGAGATCGGCACCAGAAACGTGAAGTTTCTCGTACGCGATATCACGTGTGCCGTGGGCAGTTCTGGCAGCAGTAGCTGCTACCTATCTGGAGGTTCATGA 2910 45.64 MENPFPSKEEGMGYWGPSRTQADALTFTDAGMRIPSPEDVLHSISELMSFDSYAGWGNNCAVMDPVFTSCGISSIPPTSTCPSMEGSTFPEGGSHEILTLNELGGASISVVNSFTCGDEVMFQQPDTEFGVSDVSDNTNESGSNSNNVQDMDSCLISRPIGWSLDERMLRALSLFKESSPGGILAQVWVPMKHGNQFFLSTTDQPYLLDQMLTGYREVSRWYTFSAEGKLGSLLGLPGRVFNSKIPEWTSNVRYYSDAEYLRMEHAIGHEVYGSIALPIFSNELERSCCAVLEVVTTKEKPNFDAEIDIVSRALEIVSLRTIAPPRLYPQCLKQNQRSVLAEITDVLRAVCHAHRLPLALTWIPCCYTMQAVDEAARVRVKENDVSPKGKSVLCIEETACYVNDKATQGFVHACTEHHLEEGQGIVGKALQSNHPFFYPDVKAYNINEYPLVHHARKFGLNAAVAIRLRSTYTGADDYILEFFLPVNMKGSSEQQLLLNNLSGTMQRMCRSLRTVSKDELLGAKDPDAGFQSGMVGKSATTSRRNSQSTVTDSETRVSNSINDGTKAECPKKQQTTNGTRRQADKKRSTAEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLGKIQTVLDSVKGVECRLKFDPTTGGLMAAGSLIPELNGQNSPLFSDNNPSIINLKPLPRDVNSVPSIPFDSQNPTVKLEMDDQRNSSRSVLIPEKEPSVCQLDCGEGSKSTGLDAASCQLSGLDVMDWDVPGNAAGCITAKKGNGLDFVENNLRSCSFGAANGVGTMWEGSDGMNEHYQPTTSSMTDSSNGSGLLIHGSSSSGQSVEERKHLQEKTSCVDSDSKIVVKASYKEDTVRFKFDPSLGYLQLYEEVGKRFKLNQGTFQLKYLDDEKEWVMLVSNSDMQECLEVMDEIGTRNVKFLVRDITCAVGSSGSSSCYLSGGS 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10918230 10924329 + CmaCh14G014190.1 Cma14g01419 308402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01419 969 PANTHER PROTEIN NLP8 9 966 IPR045012 GO:0003700
Cma14g01419 969 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Cma14g01419 969 MobiDBLite consensus disorder prediction 534 577 - -
Cma14g01419 969 MobiDBLite consensus disorder prediction 526 590 - -
Cma14g01419 969 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 9 966 - -
Cma14g01419 969 SUPERFAMILY CAD & PB1 domains 861 953 - -
Cma14g01419 969 SMART PB1_new 869 951 IPR000270 GO:0005515
Cma14g01419 969 Pfam RWP-RK domain 593 641 IPR003035 -
Cma14g01419 969 ProSiteProfiles RWP-RK domain profile. 575 661 IPR003035 -
Cma14g01419 969 Gene3D - 866 951 - -
Cma14g01419 969 ProSiteProfiles PB1 domain profile. 869 951 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01701 Cma14g01419 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01419 Cma-Chr14:10918230 Cma16g00528 Cma-Chr16:2695380 3.22E-21 dispersed
Cma14g01419 Cma-Chr14:10918230 Cma06g01701 Cma-Chr6:10452238 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36294 PF00564 PB1 3.10E-17 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01419 - - csv:101222520 1596.64