Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01565 ATGGCTGAGAACAGGAGATATGTTCCCATTCAGCATTTAGATCTGGTACAAATACTACAAGAAGCACAAAATAGGTGGCTTCGGCCAGCTGAAATATGTGAAATTCTTCGAAATTACCAAAAGTTTCAATTAGCACCGGATCCTCCAGTTCAGCCTCCAGCTGGATCCTTGTTCCTTTTTGATCGGAAAGCACTTAGATATTTTCGTAAAGATGGTCATAAATGGAGGAAGAAGAAAGATGGAAAAACTGTCAAAGAAGCCCATGAAAAGTTGAAGAGTGGAAGTGTGGATGTTCTGCATTGTTACTATGCACATGGTGAGGACAATGACAACTTCCAGCGAAGAAGTTATTGGATGCTTGATGAGCAATTAGAGCATATTGTCCTTGTGCATTACAGAGAAGTAAATGAGGGGCACAGGTCTGGCGTATCTCGTGTGTCAGTTGATCCAGGGTCATTGGCTGAAGGTTGTCAAGGAGGCTCAACACCCATCTTTATGCAGGAAACTTCACTTGTTGGCTCAGTTCATACTTCAAGTCCATTAAGTCCTATGCAAACAGTGCGTTCAGAAAATGGGGGTGTGGATTCTAGCGCTAGGAATGACTCTGGAATCTCTTCTGATGATCATCATGTGTTTAAATCCAGCATGCTGCCTGCATCTTTGCCTGCAGGTGATGTTTCAGGATCGTCTGATTTGTGTGGACAAGAAATCGTGATTATTCAATCTGCCATAACTGATTCCATTACACATAAGTTAATAGATGCAAGATTGGCTTCTAGTGGCTTAGTAAAAAATATGGTAAACAGTGGGCATGGCTTGATTGCTGATGCAGAAGTACCTGCCGCAAAAGCAGTTTCTCAGAGAATTGTTCAGTGCCCAACGCTGTATTTCATGTGTCAGAAAAAGAAGCACGGTTTGATCACAGTTCCTCTATTTGGTATGTGTACTGATTCTCAGGTGGTAGACGACTCGTTTGTTCAGGTAGAAAAGACATCCAAATATGATTTGAACCATGAAGGTTTTGGAGAACTCAAAAAACTTGACAGTTTTGGCAGATGGATGGATAAGGAAATTGGAAGAGATTGTGATGATTCTTTGATGACTTTGGACTCTGGTAATTACTGGTGTGCACTGGATGCTGGAAATGATGAGAAGGAAGTATCCAGTTTATCGCATCACATGCAGCTGGATATTGATTCACTGGGACCTTCACTTTCCCAAGATCAGCTATTCAGTATTTCCGATTTTTCCCCAGATTGGGCATATTCTGGAAATGTAACAAAGGTCCTAATAGTTGGCTCGTTTTTGGGAAGCAAAAAACTTCCTGTAGAAACGCAGTGGGGATGCATGTTTGGGGAAGTTGAGGTTTCTGCAGAAATTCTGTCAAACAGTGTACTTCGATGCCAAACTCCCCTGCATGCTCCAGGGCGTATTCCCTTCTATGTGACATGCTGTAATAGGCTAGCCTGCAGTGAGGTGAGAGAGTTTGAGTTTCGTGAAAAGCCACCAACCCTTTCTGTACCTAATGCTATCAAGTGTGCATCAGAAGATGAATTACGGTTTCAAATGCGTCTGACAAGGCTGTTGAATTTATGTTTAGAGGAAAAGTGGTTGGATTGCTCTATTAAAAACTGTGAGAAATGCAAAATCATAGGTTTGATAAAGTCATCCAGAAGTAATATTGCAAAATGGAGAATGATGGAAGGGATTTCTATTCCATTAATAAGTGATGGAATGAACCCTAGGGATTTTATAATCCAATCTTTGCTGGTGGATAAACTTTGTGAGTGGCTAGCATGCAAGGTTCATGAAGGAACTATGGGAACGCATGTTTTGGATGAGGAGGGCCTAGGCGTCATACATTTGGCAGCTGCACTTGGCTATGCATGGACCATAGGACCGATAATTGCTTCTGGGGTCAGTCCGAACTTCAGAGATTCGAAGGGAAGGACAGCTCTTCACTGGGCGTCTTACTTTGGGAGGGAAGAAACCGTCGCTACACTGGTTAGGTTAGGTGTTTCTCCTGGTGCCGTGGATGATCCAACTTCAGGATTTCCAGGAGGACAAACTGCTGCTGATTTGGCATCAAGTCAAGGGCATAAGGGAATTGCTGGATATTTGGCTGAAGCTGATCTTACAGCTCATTTACGTTCTTTGACTGATGGTGAAAATCTTAAGGACAACGTCAAAGAAAATGTTAACGTTGATGAAACTATTCAGACTGCAGATGTCGTATCATCGCAGTTGGCGGAAGACGAACTCCTTTCCCTCAAGGGTTCTCTCGCTGCTGTCAGGAAGTCTGTTCACGCTGCTGCCTTAATTCATGCTGCTTTCCGTGCTCGTTCATTTCGTCAAAAACAATTAATGGGAAGTGACAAGGAGATGATACATGAAGAATCAGTTGACTTAGTGGCTCTCGGAATTTTACACAAGGCTGAAAAAATTCACTATGAGGATTATCTCCACGTCGCAGCTGTGAGGATTCAACAAAATTATCGTGGCTGGAAGGGAAGAAAAGAGTTTTTGAAGATAAGAAACCGAATTGTAAAAATCCAGGCTCATGTGAGAGGACATCAAGTTCGTAAACTGTATAGAAAGGTCATATGGACAGTTAGCATTGTAGAAAAGGCAATTCTACGCTGGAGGCGGAAAAGAGTTGGTCTGCGAGGGTTCAAAGCCGAAGGGGCAACTGGAGAAGTTGCTTCCTCGCATTCACAGGTGGAGAAAAGTGATGAATATGAGTTTCTACGAATTGGGCGCCAGCTTAAATATGCTGATGTTGAAAAGGCGCTATCCAGAGTCAAGTCCATGGCTCGTTCGCCCGAGGCTCGCCATCAGTATATGAGATTAGTAACAAAGTTTCACATTTTTAAGATTAATGATGAAGAATGA 2892 42.67 MAENRRYVPIQHLDLVQILQEAQNRWLRPAEICEILRNYQKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHKWRKKKDGKTVKEAHEKLKSGSVDVLHCYYAHGEDNDNFQRRSYWMLDEQLEHIVLVHYREVNEGHRSGVSRVSVDPGSLAEGCQGGSTPIFMQETSLVGSVHTSSPLSPMQTVRSENGGVDSSARNDSGISSDDHHVFKSSMLPASLPAGDVSGSSDLCGQEIVIIQSAITDSITHKLIDARLASSGLVKNMVNSGHGLIADAEVPAAKAVSQRIVQCPTLYFMCQKKKHGLITVPLFGMCTDSQVVDDSFVQVEKTSKYDLNHEGFGELKKLDSFGRWMDKEIGRDCDDSLMTLDSGNYWCALDAGNDEKEVSSLSHHMQLDIDSLGPSLSQDQLFSISDFSPDWAYSGNVTKVLIVGSFLGSKKLPVETQWGCMFGEVEVSAEILSNSVLRCQTPLHAPGRIPFYVTCCNRLACSEVREFEFREKPPTLSVPNAIKCASEDELRFQMRLTRLLNLCLEEKWLDCSIKNCEKCKIIGLIKSSRSNIAKWRMMEGISIPLISDGMNPRDFIIQSLLVDKLCEWLACKVHEGTMGTHVLDEEGLGVIHLAAALGYAWTIGPIIASGVSPNFRDSKGRTALHWASYFGREETVATLVRLGVSPGAVDDPTSGFPGGQTAADLASSQGHKGIAGYLAEADLTAHLRSLTDGENLKDNVKENVNVDETIQTADVVSSQLAEDELLSLKGSLAAVRKSVHAAALIHAAFRARSFRQKQLMGSDKEMIHEESVDLVALGILHKAEKIHYEDYLHVAAVRIQQNYRGWKGRKEFLKIRNRIVKIQAHVRGHQVRKLYRKVIWTVSIVEKAILRWRRKRVGLRGFKAEGATGEVASSHSQVEKSDEYEFLRIGRQLKYADVEKALSRVKSMARSPEARHQYMRLVTKFHIFKINDEE 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11743952 11753790 + CmaCh14G015650.1 Cma14g01565 308548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01565 963 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cma14g01565 963 SUPERFAMILY Ankyrin repeat 610 710 IPR036770 -
Cma14g01565 963 Gene3D - 590 721 IPR036770 -
Cma14g01565 963 Pfam IQ calmodulin-binding motif 823 841 IPR000048 GO:0005515
Cma14g01565 963 Pfam IQ calmodulin-binding motif 847 865 IPR000048 GO:0005515
Cma14g01565 963 ProSiteProfiles Ankyrin repeat region circular profile. 648 680 - -
Cma14g01565 963 Pfam IPT/TIG domain 412 491 IPR002909 -
Cma14g01565 963 MobiDBLite consensus disorder prediction 175 203 - -
Cma14g01565 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 871 IPR027417 -
Cma14g01565 963 MobiDBLite consensus disorder prediction 175 201 - -
Cma14g01565 963 ProSiteProfiles Ankyrin repeat profile. 648 680 IPR002110 GO:0005515
Cma14g01565 963 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cma14g01565 963 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 951 - -
Cma14g01565 963 SMART ANK_2a 687 716 IPR002110 GO:0005515
Cma14g01565 963 SMART ANK_2a 648 677 IPR002110 GO:0005515
Cma14g01565 963 SUPERFAMILY E set domains 413 499 IPR014756 -
Cma14g01565 963 SMART iq_5 820 842 IPR000048 GO:0005515
Cma14g01565 963 SMART iq_5 843 865 IPR000048 GO:0005515
Cma14g01565 963 ProSiteProfiles IQ motif profile. 821 850 IPR000048 GO:0005515
Cma14g01565 963 Gene3D Immunoglobulins 406 504 IPR013783 -
Cma14g01565 963 Pfam Ankyrin repeats (many copies) 649 707 IPR002110 GO:0005515
Cma14g01565 963 ProSiteProfiles IQ motif profile. 844 872 IPR000048 GO:0005515
Cma14g01565 963 Gene3D - 819 868 - -
Cma14g01565 963 SMART CG_1_2 18 136 IPR005559 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01266 Cma14g01565 CCT
Cma14g01565 Cma17g00358 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01266 Cma-Chr8:7703562 Cma14g01565 Cma-Chr14:11743952 9.89E-141 dispersed
Cma14g01565 Cma-Chr14:11743952 Cma16g00713 Cma-Chr16:3713192 2.22E-56 dispersed
Cma14g01565 Cma-Chr14:11743952 Cma19g00254 Cma-Chr19:1804145 1.38E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36301 PF03859 CG-1 4.50E-49 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01565 K21596 - csv:101219268 1490.32