Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01581 ATGGACAAGAAGCTTGAAGACACAATGATGGGGTCTGAGAATTCTGCCGGAAAATACTCTCCGGTGGTGTTTTCCGATGAATTCCCGGCGACTAGCTTTGGTTCTTATCCCGGTGTGTTCGACATGCCATGTGATGACCATAAAGCTGCTGCTTCATGTTCTTCTAATTCCTTTGACTTATTGGGGAGTGGAATTGATTTTTACAATCCTTTATCTTCCTTGTTTGATTTGGTTTCTACGACGGCGCCGCTGCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCGTCGGAGGTTGTCAATGCTCCGCCCACTCCTAATTCTTCCTCCGTTTCTTCTTACTCCAATGACGCTGCCGCCATTGAAGAAGTTGACAAGAGCAACACCGAGAAGCCTTCCTCTTCTAATGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAGCCGAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGATGGGTATCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAACAGTCCTTACCCTAGAAGCTATTACCGTTGTACTACGGTAGGGTGTGGTGTGAAGAAGAGAGTGGAGCGATTGTCCAACGACCAATCGACCGTCGTTACAACTTACGAAGGCCAACACACCCATCAAAGTCCGATAATTCCACGAGGTAGTATCAGAGTCCTACCGGAATCCAATCTCGACGTTACTTCCACCACCGGACTTTTATTCCAACCCAACACTCCCCAATCCTTCATGTATAGCCCTCCACCACCATTTCTAACAATCAACTCGTTGTCAACGAACCCTCGTCCTCCTTCTTCCTTTCCGCCACCACCGCCACCGCCACCGCCACCGCCACCGTCGTCTCAAGCTTTCATGCTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAACAAAATGGATGA 972 48.77 MDKKLEDTMMGSENSAGKYSPVVFSDEFPATSFGSYPGVFDMPCDDHKAAASCSSNSFDLLGSGIDFYNPLSSLFDLVSTTAPLLSSPASTVPESSEVVNAPPTPNSSSVSSYSNDAAAIEEVDKSNTEKPSSSNVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERLSNDQSTVVTTYEGQHTHQSPIIPRGSIRVLPESNLDVTSTTGLLFQPNTPQSFMYSPPPPFLTINSLSTNPRPPSSFPPPPPPPPPPPPSSQAFMLRDHGLLQDLVPLQMRKEPKDEQNG 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11876011 11877554 - CmaCh14G015810.1 Cma14g01581 308564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01581 323 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 82 309 - -
Cma14g01581 323 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 MobiDBLite consensus disorder prediction 257 297 - -
Cma14g01581 323 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 MobiDBLite consensus disorder prediction 275 295 - -
Cma14g01581 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 309 IPR044810 GO:0003700
Cma14g01581 323 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 MobiDBLite consensus disorder prediction 86 116 - -
Cma14g01581 323 MobiDBLite consensus disorder prediction 86 153 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01581 Cma17g00379 CCT
Cma14g01581 Cma17g00379 ECH
Cma06g01571 Cma14g01581 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00480 Cma-Chr8:2725379 Cma14g01581 Cma-Chr14:11876011 5.54E-43 dispersed
Cma14g01581 Cma-Chr14:11876011 Cma19g01082 Cma-Chr19:9010129 1.75E-46 dispersed
Cma20g00797 Cma-Chr20:3733279 Cma14g01581 Cma-Chr14:11876011 1.43E-73 transposed
Cma14g01581 Cma-Chr14:11876011 Cma17g00379 Cma-Chr17:2109793 8.38E-68 wgd
Cma14g01581 Cma-Chr14:11876011 Cma06g01571 Cma-Chr6:9833175 5.42E-130 wgd
Cma14g01581 Cma-Chr14:11876011 Cma08g01289 Cma-Chr8:7800804 1.67E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36303 PF03106 WRKY 2.60E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01581 - - cmos:111457825 505.753