Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00941 ATGAACCGGGTACCGGTGGTAGGAGAAGCGGCGGAGGAAGAACGAGCGGTGGCGGAGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAGGAAGAAGCTTAGTCTATCAAAGCATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATACCAGTATTTAAGGAGGTGGTTTGGCTCATTGACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTATTAAGGTTGCTCTCCCAGCCGTCGACTCAAGCCACGGCCGACAGCCACCCCTCCCGGTGTCCACTATAACCATGTGTCCCCAGTGCAAGCGCGTAACCGCTGCCACCATAACATCTAGTAGGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCACCGAAGGCGGTTCGGTCCGCCCTCAAGTTGCAGCAGCCGTCGCAAGGTTGA 594 55.56 MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSALKLQQPSQG 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4997473 5000029 + CmaCh15G009410.1 Cma15g00941 310091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00941 197 Pfam Homeodomain 38 92 IPR001356 GO:0003677
Cma15g00941 197 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Cma15g00941 197 MobiDBLite consensus disorder prediction 8 27 - -
Cma15g00941 197 Coils Coil 107 127 - -
Cma15g00941 197 SMART halz 94 137 IPR003106 GO:0006355|GO:0043565
Cma15g00941 197 Pfam Homeobox associated leucine zipper 94 126 IPR003106 GO:0006355|GO:0043565
Cma15g00941 197 Gene3D - 18 98 - -
Cma15g00941 197 PANTHER - 1 173 - -
Cma15g00941 197 MobiDBLite consensus disorder prediction 1 41 - -
Cma15g00941 197 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 173 - -
Cma15g00941 197 SUPERFAMILY Homeodomain-like 28 95 IPR009057 -
Cma15g00941 197 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Cma15g00941 197 SMART HOX_1 36 98 IPR001356 GO:0003677
Cma15g00941 197 CDD homeodomain 37 95 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00039 Cma15g00941 CCT
Cma04g02089 Cma15g00941 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00039 Cma-Chr4:215669 Cma15g00941 Cma-Chr15:4997473 3.14E-56 dispersed
Cma15g00941 Cma-Chr15:4997473 Cma08g00556 Cma-Chr8:3178646 8.14E-47 dispersed
Cma15g00941 Cma-Chr15:4997473 Cma04g02089 Cma-Chr4:14499939 6.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36449 PF00046 Homeodomain 1.10E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00941 K09338 - csv:101206325 207.994