Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01221 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGAGGAGGAGGGCTTGGAGGGTCTGGGTCAGGGGTGCCTACGGCTGGATCCCATGCCTCCCCTGTGTTCCGACCGATGGCTAACCAGGGTGTTCTGTCTCACTCAAATCTCAGAGGCAATTCCGTTGGATCAACATATACTGTTGAACCATCTCATTCAAATTATCTTCGTGGGATGAGTATCAATGCCTCAGCTGGAGTGAACTCTGGTGAACCTGTAAAGAGGAAGAGAGGGAGGCCCCGGAAATATGCTCCAGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGTTGGTTCTAAGCTCTCACCGGGAATGAGTTTGTTGACCCCCAGACGAAGACGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCTCAACTTGGTCATGATCATGCTTATTCTTTTCAAGTTAGTTATATGCTATGTGTTTGTGCTGTTTACCATGGAAAATTTAGTGATGACATCGTAGCAAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCATCTTGTCTGGGAATGGTACCGTTTCTTCTGTAACGCTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTGTCTGGTTCTTACTTGGTGGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGCGGTATTAGTGTTTCCCTCTCTAGTCCTGATGGTCATGTTGTCGGTGGTGGCGTTGCCGTTCTTATGGCAGCTGGCCCCGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTCGCTGGTCCGAAAAGCAACGACGATTCCAGAAACGAGCACCATGATAATATGGTTTCGCCTACGAGTGCCCCATCTGCCCACGCCTACAACCCGTCTCCGATTGGTGGTTGGCCCGGTTCCCGTTCGATTGATGTGAGAAACTCCCATACTGGAATTGACTTGACGCGAGGATGA 1041 49.66 MDGREGMALSGGSASYYIHRGGGLGGSGSGVPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYTVEPSHSNYLRGMSINASAGVNSGEPVKRKRGRPRKYAPDGQVSLGLSPMSVGSKLSPGMSLLTPRRRRGRPPGSGRKQQLAQLGHDHAYSFQVSYMLCVCAVYHGKFSDDIVAKVLSFAQQRPRAVCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLSSPDGHVVGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGPKSNDDSRNEHHDNMVSPTSAPSAHAYNPSPIGGWPGSRSIDVRNSHTGIDLTRG 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7725911 7731880 - CmaCh15G012210.1 Cma15g01221 310371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01221 346 MobiDBLite consensus disorder prediction 290 304 - -
Cma15g01221 346 MobiDBLite consensus disorder prediction 332 346 - -
Cma15g01221 346 PRINTS AT-hook-like domain signature 129 140 IPR017956 GO:0003677
Cma15g01221 346 PRINTS AT-hook-like domain signature 93 103 IPR017956 GO:0003677
Cma15g01221 346 MobiDBLite consensus disorder prediction 85 147 - -
Cma15g01221 346 CDD DUF296 175 278 IPR005175 -
Cma15g01221 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 175 279 IPR005175 -
Cma15g01221 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 174 279 - -
Cma15g01221 346 MobiDBLite consensus disorder prediction 289 346 - -
Cma15g01221 346 ProSiteProfiles PPC domain profile profile. 159 302 IPR005175 -
Cma15g01221 346 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 346 - -
Cma15g01221 346 Gene3D - 172 291 - -
Cma15g01221 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01007 Cma15g01221 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01221 Cma-Chr15:7725911 Cma08g00912 Cma-Chr8:5684400 4.52E-75 dispersed
Cma15g01221 Cma-Chr15:7725911 Cma02g01459 Cma-Chr2:8380805 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01221 - - csv:101219973 545.814