Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01234 ATGGGCAATGAAGTGCAATTATTAGGAAGTGGAGGTCCGTTTCTGCAAAGAAAAGCTTTGACAAGGAATCCGAAGAACGACGACGATTATTGTTTAATTATGTCGTTAAAAAGGTTCCCGCCGTTTCCAACGAGGCGTTTTCTTGGTGGGTTCGCCATATCCGCTCTGGTTTTGCTGCTAATTTTTCCTTGTCATGTGACGGCTGGGGATATTGTTCATCATGACGATTTGACTCCCAAAAAGCCTGGCTGTGAGAACGATTTCATTCTGGTGAAAGTTCAAACTTGGATTGATGGCAAAGAAGCTAGTGAATTTGTTGGCGTTGGTGCTAGATTTGGCGCTACCATCGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTAGTTCTTGCACATCCCCGTGATTGTTGCGGTGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTTGATCGAGGTCACTGCAAATTTACTACTAAAGCAAATATTGCAGAAGCTGCAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCTGTCGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTATGATCTTATGCTCATCCTTTTGGTCTGCCTGGAGTGCTAGGGAAGCTGCCATTGAGCAGGACAAGCTACTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGATGTGGGCAGCCCTGGTGTTGTGTATATCAACATGGCATCAGCCGTCCTGTTTGTTGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTATTGGTTCATCGAGCTTTTGGTTGTCCTTTTCTGCATAGGAGGTGCAGAGGGCTTGCAAACTTGTTTGGTCGCTTTATTGTCAAGATGCTTTAAGCATGTTGGAGAATCATACATCAAAGTGCCATTCTTTGGAGCTGTTTCATACCTCACACTGGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTCTTTGGGCTGTTTATCGAAACGTGTCGTTTGCCTGGATCGGTCAAGACATGCTTGGAATTGCACTGATCATTACAGTTCTTCAAATAGTTCGCATACCAAATCTCAAGGTTGGAACAGTGCTGCTCAGTTGTGCCTTCCTATATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTAGCTCGTGGTGATAAAAGCGGAGAGGATGGCATCCCAATGCTGCTGAAGATCCCTCGCATGTTTGATCCATGGGGTGGTTATAGCATTATTGGATTTGGTGATATCCTTTTACCTGGACTCGTTGTAGCGTTTTCTCTCAGGTATGACTGGTTGGCAAATAAGAGCCTCCGGCTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATCACCTATGTTGCTTTGAACCTGATGGACGGTCACGGCCAGCCTGCGCTGCTTTACATCGTCCCGTTTATGCTCGGAACCCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTTTGGACAAAAGGAGAACCAGAGAGGGCCTGCCCTCATGCCCATCTGCTCATCAATGAGGATTAA 1668 44.84 MGNEVQLLGSGGPFLQRKALTRNPKNDDDYCLIMSLKRFPPFPTRRFLGGFAISALVLLLIFPCHVTAGDIVHHDDLTPKKPGCENDFILVKVQTWIDGKEASEFVGVGARFGATIVSKEKNANQTRLVLAHPRDCCGVPKNKLSGDIIMVDRGHCKFTTKANIAEAAELYKMVCDPDETDLDIHIPAVMLPQDAVSVQLYSPLRPPVDIAEVFLWLMAVGMILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDVGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKHVGESYIKVPFFGAVSYLTLAVSPFCIAFAVLWAVYRNVSFAWIGQDMLGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRLGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFMLGTLLTLGKKRGDLGILWTKGEPERACPHAHLLINED 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7815763 7823358 + CmaCh15G012340.1 Cma15g01234 310384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01234 555 Pfam Signal peptide peptidase 264 540 IPR007369 GO:0004190|GO:0016021
Cma15g01234 555 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 51 551 - -
Cma15g01234 555 SMART psh_8 262 529 IPR006639 GO:0004190|GO:0016021
Cma15g01234 555 Gene3D - 92 198 - -
Cma15g01234 555 PANTHER SIGNAL PEPTIDE PEPTIDASE 51 551 IPR007369 GO:0004190|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01443 Cma15g01234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01234 Cma-Chr15:7815763 Cma17g00435 Cma-Chr17:2574258 0 dispersed
Cma15g01234 Cma-Chr15:7815763 Cma16g00118 Cma-Chr16:546752 3.26E-21 wgd
Cma15g01234 Cma-Chr15:7815763 Cma18g01252 Cma-Chr18:9766061 6.76E-22 wgd
Cma15g01234 Cma-Chr15:7815763 Cma02g01443 Cma-Chr2:8301676 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01234 K09597 - csv:101216966 970.304