Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01346 ATGCAAGGCCACGCCGACACCGGCATTGAACGTCTGCTGTCTACTGCTTCTGTTTCTCTCTCTTCCTTTTCAATTAATCGTCCCTTTTTCTCTCTCCTCCTCCATTTCTTCATTCCTTTCTTCTTCCTTTTCTGGAATTTCAACTCTCCAATTCACTGTTCTGTTTTGATTTTACTTGGAATAACACGGCGGTGGGTTTTGGGATTCCGACGGTTTTCGCCGGAGTTAATGGAAGGGGTTGGAGGTGGGTCGGGATCGGAATTGTTTGGAGTTACGCCGCCGTTGACTGTCGAGGCTGTAAGTGATTCTCAGCCAGTGGAAGCTGCTTCTCCGATTAGTAGTCGACCTCCTGCATCGTCTTCGTTGAATTATGAGGAACTCATTCGCGGTGGAGGACAGATGGCGATTGACGACGACGCGCTAGTCGGAGAAGATGCAGGCGGCGGTGGTGGCTCTTCTGGGAATCGTTGGCCTCGTCAAGAAACTCTTGCGTTGCTTAAAATTAGATCGGATATGGATTCTGCCTTCCGTGATGCTACACTTAAAGGACCTCTCTGGGACGAAGTCTCCAGTTGCACGAGAGTCATTTTGAATTCGGTTGGAGTAGTGATTGCTAACCGTTTTGAAATGGGTTGGGTTGGATTGAATTACAGGAAGCTCGGAGAAATGGGTTATGTCAGAAATGCGAAGAAATGCAAAGAGAAATTTGAGAATGTACAGAAATATTACAAGCGCACAAAGGAAGGGCGAGGAGGGCGTGGAGATGGGAAGACGTACAAATTCTTCACGCAGCTTGAGGCGCTACACAACGCCGCATCTCAAAACGTGGCGGCATCGGGCTTCGGGATTAGCAACCCAACTCCAATCTCAGCCGTCAAAATCTCACAAACCCCAATGGGAATCTTTTCTCCGCCGCCCACCATCGCCGCTCCAATGGGTGTCAGCTTTTCATCCTACACGTCATCTTCATCAACAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGGTTTTGATGTTGAAGGAGAGCCGTCGAGTGTGGCGGGAAGTAGCCGGAAGCGGCGGCGGAGAGCGGCGATTAAGGGAAAAAGTGGTGGCCGGACGAGAAGCCATAAGATGATGATGGGGTTTTTTGAGGGTTTGATGAAGGAAGTGCTGCAGAAACAGGAAGCTATGCAACAGAGATTCCTGGAGGCGATTGAGAGAAGAGAAGAAGAGAGAATGATGAGAGAAGAGACATGGAAGAGGCAAGAAATGGGGAGATTAAGGGAGGAGCAAGAAAAAATGGCTCAAGAACGGACAATTTCTGGGTCTAGAGATGCGGCCATAATTGCTTTTCTTCAGAAATTCACAGGCCAAACCATTCAATTACCGTCAGTGAATATCTCTCCTTCAGCCCCACAACAACACTATGATCTGTCAGTGCCTGTCCCTGCGCCCACGCCTGTCGCTATGCCACTATCCCCTGTCCCCCCGCCTCCGCCATTGAAAACCCAGCCGCCTCCAAATACAATGCCATTTTTGGATCACCCAATATCATTAACAAATCAGGAAAGCAGCCATGGCGGCCGAGGAGATGGCCCTTCAGAACCCATTTCTTCAAGATGGCCTAAACCGGAAGTTCTAGCGCTAATTAAGCTGAGAGGTGGGCTTGAATCAAGATATCAAGAAATGGGTCCTAAGGGCCCTCTTTGGGAAGAGATTTCAGCTGGAATGAACCGATTGGGTTACAAAAGAAGCGCCAAAAGATGCAAGGAAAAATGGGAGAATATCAACAAATACTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGCCGCGAGGATTCCAAAACTTGCCCCTATTTCGATGAACTCGACGCTCTTTACCGGAAAAAGATCCCCGCTGCCGGGGGTTCTGACGGTGGCGGCTCCTTTTGCGACACCGCCAAATTAGAACAAACCCACATCGAAATGCCTCATACCACACCCGCTGAAGAACAACCACCACCACCACCACCACCGCCGCCGCCGCCGCCGCCGTCACCACCACCCACAAAGCCAGAAGACATTGTGAGTGAGTTGATGGAGCTTCAGAACCTTTACGATGTCGATCAAGTCGACGATGAGGACGATGACGACGACGACGACAACGACAACACCCGAGAAGAAAAGAGGAGGAACATGGATTACAAAATGGAGTTTCAGACAAGTGAGTTTCAATCAATGGCGGTGGTTCAATAA 2220 49.46 MQGHADTGIERLLSTASVSLSSFSINRPFFSLLLHFFIPFFFLFWNFNSPIHCSVLILLGITRRWVLGFRRFSPELMEGVGGGSGSELFGVTPPLTVEAVSDSQPVEAASPISSRPPASSSLNYEELIRGGGQMAIDDDALVGEDAGGGGGSSGNRWPRQETLALLKIRSDMDSAFRDATLKGPLWDEVSSCTRVILNSVGVVIANRFEMGWVGLNYRKLGEMGYVRNAKKCKEKFENVQKYYKRTKEGRGGRGDGKTYKFFTQLEALHNAASQNVAASGFGISNPTPISAVKISQTPMGIFSPPPTIAAPMGVSFSSYTSSSSTEEEEEEEEEEMGFDVEGEPSSVAGSSRKRRRRAAIKGKSGGRTRSHKMMMGFFEGLMKEVLQKQEAMQQRFLEAIERREEERMMREETWKRQEMGRLREEQEKMAQERTISGSRDAAIIAFLQKFTGQTIQLPSVNISPSAPQQHYDLSVPVPAPTPVAMPLSPVPPPPPLKTQPPPNTMPFLDHPISLTNQESSHGGRGDGPSEPISSRWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMNRLGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALYRKKIPAAGGSDGGGSFCDTAKLEQTHIEMPHTTPAEEQPPPPPPPPPPPPPSPPPTKPEDIVSELMELQNLYDVDQVDDEDDDDDDDNDNTREEKRRNMDYKMEFQTSEFQSMAVVQ 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8453337 8457364 - CmaCh15G013460.1 Cma15g01346 310496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01346 739 MobiDBLite consensus disorder prediction 351 368 - -
Cma15g01346 739 PANTHER - 218 713 - -
Cma15g01346 739 PANTHER - 131 190 - -
Cma15g01346 739 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 218 713 - -
Cma15g01346 739 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 131 190 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 695 711 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 488 535 - -
Cma15g01346 739 CDD GT1 534 599 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 656 680 - -
Cma15g01346 739 Coils Coil 386 406 - -
Cma15g01346 739 ProSiteProfiles Myb-like domain profile. 534 592 IPR001005 -
Cma15g01346 739 MobiDBLite consensus disorder prediction 317 371 - -
Cma15g01346 739 Pfam Myb/SANT-like DNA-binding domain 534 621 IPR044822 -
Cma15g01346 739 Pfam Myb/SANT-like DNA-binding domain 155 268 IPR044822 -
Cma15g01346 739 MobiDBLite consensus disorder prediction 509 523 - -
Cma15g01346 739 Gene3D - 157 245 - -
Cma15g01346 739 Gene3D - 536 597 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 652 739 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 488 507 - -
Cma15g01346 739 CDD GT1 155 247 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 324 340 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00453 Cma15g01346 CCT
Cma02g00969 Cma15g01346 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00071 Cma-Chr10:273170 Cma15g01346 Cma-Chr15:8453337 1.42E-09 dispersed
Cma13g00388 Cma-Chr13:4468626 Cma15g01346 Cma-Chr15:8453337 1.16E-13 dispersed
Cma15g01346 Cma-Chr15:8453337 Cma20g01075 Cma-Chr20:8150436 2.46E-17 dispersed
Cma15g01346 Cma-Chr15:8453337 Cma02g00969 Cma-Chr2:5785720 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36487 PF13837 Myb_DNA-bind_4 1.10E-12 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01346 - - cmos:111435698 957.207