Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00445 ATGTTCTTCATGGACTTGCCAATGAAGAGGCCTATTTCAGGTGATCGGAGAACCCAATACAGAATAGAAGCTAGAAATCTTTGTTACAAAATAAGTGAGAGTTTTGATGGGTTGAATTGGTTCTGTGGTGGAGGCAGCTCAAAGAGAGGTCCAAAGTTCATCTTAAAAAATGTGAACTGTGAGGCACGAGCAGGGGAGATTACTGCCATAGCTGGTCCTAGTGGGGCTGGCAAAACAACATTGCTAGAGATTCTTGGAGGGAACATACCTTTAAAGAAGATTTCAGGTCAAGTGCTTGTTAATGATCAGCATATGATTGAGAAAACGTTTCCAAGAATCTCGGGATACGTCACACAGGACGATGCGCTATTCCCTTTCCTCACAGTTGAAGAAACACTCATGTATAGTGCTCTGTTGAGGCTTGGTGGTGGGAGAAAAGAGGCTGAATCTAGAGTGAGGAAGCTAATGAAGGACCTTGGATTGGAACACGTAGCAGCGTCGAGAGTTGGAGATGGATCGAACCGAGGCATTTCAGGAGGCGAAATGCGTCGAGTTTCGATTGGAGTTGAATTGGTTCATGACCCAGCTGTGATTTTCATTGATGAACCTACTTCAGGGTTGGATTCTGTCTCGGCAGTTCATGTTATGTCAGTGCTTAGAAGAATGGTCATTAGCCAAGGTAAGACTGTTCTTATAACCATCCATCAACCCGGTTTTCGAATCATGGAACTCTTTGATCGTCTGATTCTTCTGTCGAGTGGAGTTGTGATGCATAATGGACCATTGGGTCATCTTGAGGAGAAGCTTAAGCTTGCTACTCATCAGATCCCTCACCATGTCAATGTTCTTGAATTCGCCATTGACGTGGTGGATAGTTTGGCTATGCATACTTCAGAAACTTTCAACAAACTCCATTACCAACAAAACCGGGTTGAGAATCAGACAATAAGAGCTCTACACATCGACACAAAGGACGAAAAATCCGTTTCGTACCAGAATTCTCGATCCACGGAAGTCATAATACTAGGACAAAGGTTTTTCAGAAACACATTTAGGACCAAACAACTCTTTGCTACAAGAGTCATTCAAGCCTTGGTGGCTGGATTAGTACTTGGGACCATATTCTTCAGGACCGGGAATAACAACGACAAAACTACGTTGCAAACCCGGCTCGGGTTCTTCGCCTTTAGTCTCACGTTCTTGCTGTCTTCAACGACAGAAGGCCTTCCAATCTTCTTGAGGGAGAGAATGATCCTAATGAGAGAGACATCAAGAGGTGCTTACAGAGTATCTTCCTATGTTCTAGCAAACACATTCATATTTCTCCCATTCCTTCTGATGGTCTCTCTACTCTTCGCAGCCAGTGTTTACTGGTTGGTTGGTTTGAAAAACGACGTTTTCGGGTTCTTCTACTTCTCTCTAATCGTTTGGATGGTCGTTCTAATGTCGAATTCTTTCGTAGCATGTTTCAGTGCTCTTGTCCCAAATTTCATTACAGGAAACTCAGTAATAGCAGGGCTAATGGGGTGTTTCTTTCTGTTTTCTGGTTACTTTATATCAAAGAAGAACATCCCCAACTACTGGATTTTCATGCACTATTTGAGTCTTTTCAAGTACCCATTTGAGTGTTTCTTGATAAATGAGTATGGAGGAGATCCAGGGAAGGGAAGATGCATAGAGTCCAAACAAGGAGTATGTACAACATATGGAGAAGTGTTCTTAAGACAACAAGATATAAAAGAGTCACACAAATGGAGCAATTTGGCAGTAATGTTGGGATTCATTGTTGGGTACAGGATCCTGTCTTTTGTGATCTTGTGGTACAGATGTAACAGAACCAGAAGCTAG 1848 42.64 MFFMDLPMKRPISGDRRTQYRIEARNLCYKISESFDGLNWFCGGGSSKRGPKFILKNVNCEARAGEITAIAGPSGAGKTTLLEILGGNIPLKKISGQVLVNDQHMIEKTFPRISGYVTQDDALFPFLTVEETLMYSALLRLGGGRKEAESRVRKLMKDLGLEHVAASRVGDGSNRGISGGEMRRVSIGVELVHDPAVIFIDEPTSGLDSVSAVHVMSVLRRMVISQGKTVLITIHQPGFRIMELFDRLILLSSGVVMHNGPLGHLEEKLKLATHQIPHHVNVLEFAIDVVDSLAMHTSETFNKLHYQQNRVENQTIRALHIDTKDEKSVSYQNSRSTEVIILGQRFFRNTFRTKQLFATRVIQALVAGLVLGTIFFRTGNNNDKTTLQTRLGFFAFSLTFLLSSTTEGLPIFLRERMILMRETSRGAYRVSSYVLANTFIFLPFLLMVSLLFAASVYWLVGLKNDVFGFFYFSLIVWMVVLMSNSFVACFSALVPNFITGNSVIAGLMGCFFLFSGYFISKKNIPNYWIFMHYLSLFKYPFECFLINEYGGDPGKGRCIESKQGVCTTYGEVFLRQQDIKESHKWSNLAVMLGFIVGYRILSFVILWYRCNRTRS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2216001 2217848 - CmaCh16G004450.1 Cma16g00445 311043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00445 615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 278 IPR003439 GO:0005524
Cma16g00445 615 CDD ABCG_EPDR 34 260 - -
Cma16g00445 615 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 4 607 - -
Cma16g00445 615 Pfam ABC-2 type transporter 338 549 IPR013525 GO:0016020|GO:0140359
Cma16g00445 615 Pfam ABC transporter 55 205 IPR003439 GO:0005524
Cma16g00445 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 271 IPR027417 -
Cma16g00445 615 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 607 - -
Cma16g00445 615 Pfam ABC-2 type transporter 235 300 IPR043926 GO:0140359
Cma16g00445 615 SMART AAA_5 64 255 IPR003593 -
Cma16g00445 615 Gene3D - 15 287 IPR027417 -
Cma16g00445 615 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00664 Cma16g00445 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00179 Cma-Chr14:746519 Cma16g00445 Cma-Chr16:2216001 6.27E-126 dispersed
Cma15g00420 Cma-Chr15:1881538 Cma16g00445 Cma-Chr16:2216001 2.73E-127 dispersed
Cma16g00445 Cma-Chr16:2216001 Cma19g01031 Cma-Chr19:8800427 0 dispersed
Cma16g00445 Cma-Chr16:2216001 Cma16g00090 Cma-Chr16:398509 1.13E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00445 K05681 - csv:101213419 1093.95