Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01240 ATGGCTTCCATTTCTCCTCCTCTTCTTCCCTTCTTCTTCCTCTTCTTCATCTCTTGTGTACATTCAGCTACTTTCACCATTTTAAACCAATGTGATTACCCAATTTGGCCCGGAGTTTTGTCGGGCGCTGGCACCTCACAACTTTCGACCACCGGTTTTGTCCTGCAGCCAGGACAGTCCAACGCCCTCACCATGCCCCCGTCGTGGTCTGGCCGGATTTGGGGTCGCACTTATTGCTCCCAAGACAATGCTGGTAGATTCTCCTGTGCCACTGCCGACTGCGGCTCGGGCACCGTTGAATGCAACGGTAGTGGCGCTGCCCCGCCTGCTACTCTTGCTGAGTTCACTCTCAATGGTGCTGGTGGACTTGATTTCTATGATGTTAGCCTTGTCGATGGCTATAATGTGCCCATGTTAATCACCCCACAAGCTAGCTCAGGCGGAGGCAATTGCATGACGATCGGGTGTGCAGCAAACTTAAACACCGAGTGTCCAATGGAGCTAAGAGTGGCAGTGGATGGGCAGAGTGTGGCGTGCAAGAGCGCATGTGGTGCATTTGGTGAGCCGCAATATTGCTGCAATGGCGAATATGGGAGCCCAAGCACTTGTCGACCCACGTCTTACTCAGAGTTCTTCAAGTCGGCGTGTCCGCAAGCTTATAGTTATGCCTATGATGATGGAACTAGCACCTTCACTTGCGCCGCCGCCAATTACCTCGTCACTTTCTGTCCTCTTTCAACTAGTGTGAAAGCATCAAACGGGCAGTACCCCCGGGCAGTGGATGTCTCAACAGCCGAGTATTCCGGCAGGCCGTTAACGTCAGTGGCCGTTATATTCACCGTGACGGCAGCTCTAAGATCGGAAAACGACAGCGACAACGCATTTCTGAGCTACAGTTTTGAAGCCATGGAGTGGAACCCACTTTGTTCCTTGGCTTTGGAACAACTAATATGA 954 52.1 MASISPPLLPFFFLFFISCVHSATFTILNQCDYPIWPGVLSGAGTSQLSTTGFVLQPGQSNALTMPPSWSGRIWGRTYCSQDNAGRFSCATADCGSGTVECNGSGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQASSGGGNCMTIGCAANLNTECPMELRVAVDGQSVACKSACGAFGEPQYCCNGEYGSPSTCRPTSYSEFFKSACPQAYSYAYDDGTSTFTCAAANYLVTFCPLSTSVKASNGQYPRAVDVSTAEYSGRPLTSVAVIFTVTAALRSENDSDNAFLSYSFEAMEWNPLCSLALEQLI 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9373372 9376657 + CmaCh16G012400.1 Cma16g01240 311838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01240 317 ProSiteProfiles Thaumatin family profile. 22 244 IPR001938 -
Cma16g01240 317 Gene3D Thaumatin 23 244 IPR037176 -
Cma16g01240 317 SUPERFAMILY Osmotin, thaumatin-like protein 23 244 IPR037176 -
Cma16g01240 317 SMART tha2 25 244 IPR001938 -
Cma16g01240 317 Pfam Thaumatin family 29 244 IPR001938 -
Cma16g01240 317 PANTHER OS03G0233200 PROTEIN 15 262 IPR001938 -
Cma16g01240 317 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Cma16g01240 317 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Cma16g01240 317 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Cma16g01240 317 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Cma16g01240 317 PANTHER OS09G0536300 PROTEIN 15 262 - -
Cma16g01240 317 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Cma16g01240 317 CDD TLP-PA 24 243 - -
Cma16g01240 317 PIRSF PR5 2 288 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00680 Cma16g01240 CCT
Cma07g00423 Cma16g01240 CCT
Cma03g00680 Cma16g01240 ECH
Cma07g00423 Cma16g01240 ECH
Cma16g01240 Cma20g00764 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00407 Cma-Chr6:1891666 Cma16g01240 Cma-Chr16:9373372 5.82E-41 dispersed
Cma07g00886 Cma-Chr7:4187203 Cma16g01240 Cma-Chr16:9373372 1.45E-85 dispersed
Cma16g01240 Cma-Chr16:9373372 Cma20g00764 Cma-Chr20:3604467 9.16E-96 dispersed
Cma20g00763 Cma-Chr20:3600503 Cma16g01240 Cma-Chr16:9373372 2.45E-96 dispersed
Cma07g00423 Cma-Chr7:1816089 Cma16g01240 Cma-Chr16:9373372 1.01E-110 transposed
Cma16g01240 Cma-Chr16:9373372 Cma03g00680 Cma-Chr3:5628886 9.90E-96 wgd
Cma16g01240 Cma-Chr16:9373372 Cma06g00575 Cma-Chr6:2769173 4.24E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01240 - - csv:101216818 472.626