Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00207 ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAAACTGCAAAATCTACTCCTGAGGATCCACTAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTGGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAACTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGCCTTCACGAACCAGTCATATTTTGGAGATCTTGCATGGGAGAGGCTTGGTTTATGGATGATAGCAGTGAAGACCAGAGGCTTCCTCATCACCGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTGGCAGAATTAGGAGTGTTGCACTGGAAATTGAACCCTAAGGTATATGAAAACGACGAGGAATTGAAGAAAATCAGAGATGACAGGGGATACAATTACGTGGATTTACTTGATATATGTCCAGAGAAACTTGCCAATTATGAAGCGAACTTGAAGGATTTCTTCACAGAGCACATTCACGCCAATGAGGAAATTCGCTACTGCTTGGATGGAAGTGGTTACTTCGATGTCCGGGACAAGGACGACCGTTGGATTCGAATCTGGATTAAGCCTGGCGATCTTATCATCTTGCCGGCCGGTATCTACCATCGTTTTACTCTGGACACCAATAATTATACAAAGTTAATGAGGCTGTTCCAAGGAGAGCCAATTTGGACCCCGTTTAACAGACCACAAGAGCAGCATCCAGCAAGGAAAGAGTACCTCAAGACCTTCACTGAGAAAGCTGGAGTGGCACTCGAGGCTCATTAA 1596 45.8 MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGASALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPLAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAAGPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNPELSSSSLEGYMNHQMRTHISNKNLGQFATSSLSPTGVTKAFVGTADNQPKLACFPVDLNVKGLHEPVIFWRSCMGEAWFMDDSSEDQRLPHHRNPKEFVSMDQLAELGVLHWKLNPKVYENDEELKKIRDDRGYNYVDLLDICPEKLANYEANLKDFFTEHIHANEEIRYCLDGSGYFDVRDKDDRWIRIWIKPGDLIILPAGIYHRFTLDTNNYTKLMRLFQGEPIWTPFNRPQEQHPARKEYLKTFTEKAGVALEAH 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1073070 1079421 - CmaCh17G002070.1 Cma17g00207 312102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00207 531 MobiDBLite consensus disorder prediction 221 279 - -
Cma17g00207 531 MobiDBLite consensus disorder prediction 222 236 - -
Cma17g00207 531 Pfam Jas motif 246 270 IPR018467 -
Cma17g00207 531 SUPERFAMILY RmlC-like cupins 346 520 IPR011051 -
Cma17g00207 531 MobiDBLite consensus disorder prediction 109 138 - -
Cma17g00207 531 CDD cupin_ARD 374 502 IPR004313 GO:0010309
Cma17g00207 531 MobiDBLite consensus disorder prediction 183 207 - -
Cma17g00207 531 PANTHER ACIREDUCTONE DIOXYGENASE 331 524 IPR004313 GO:0010309
Cma17g00207 531 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 347 515 IPR027496 GO:0016491|GO:0019509
Cma17g00207 531 Pfam tify domain 144 172 IPR010399 -
Cma17g00207 531 Pfam ARD/ARD' family 349 502 IPR004313 GO:0010309
Cma17g00207 531 Gene3D Jelly Rolls 342 523 IPR014710 -
Cma17g00207 531 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cma17g00207 531 MobiDBLite consensus disorder prediction 123 138 - -
Cma17g00207 531 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 331 524 - -
Cma17g00207 531 SMART tify_2 138 173 IPR010399 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01745 Cma17g00207 CCT
Cma06g01371 Cma17g00207 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00207 Cma-Chr17:1073070 Cma17g00674 Cma-Chr17:5642025 7.28E-08 dispersed
Cma08g01125 Cma-Chr8:6956617 Cma17g00207 Cma-Chr17:1073070 0 transposed
Cma14g01745 Cma-Chr14:12761925 Cma17g00207 Cma-Chr17:1073070 1.01E-86 wgd
Cma17g00207 Cma-Chr17:1073070 Cma06g01371 Cma-Chr6:8954752 2.02E-88 wgd
Cma17g00207 Cma-Chr17:1073070 Cma08g01124 Cma-Chr8:6953686 4.63E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36634 PF03079 ARD 2.20E-56 CL0029 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00207 - - bhj:120092625 607.06