Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00207 ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAAACTGCAAAATCTACTCCTGAGGATCCACTAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTGGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAACTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGCCTTCACGAACCAGTCATATTTTGGAGATCTTGCATGGGAGAGGCTTGGTTTATGGATGATAGCAGTGAAGACCAGAGGCTTCCTCATCACCGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTGGCAGAATTAGGAGTGTTGCACTGGAAATTGAACCCTAAGGTATATGAAAACGACGAGGAATTGAAGAAAATCAGAGATGACAGGGGATACAATTACGTGGATTTACTTGATATATGTCCAGAGAAACTTGCCAATTATGAAGCGAACTTGAAGGATTTCTTCACAGAGCACATTCACGCCAATGAGGAAATTCGCTACTGCTTGGATGGAAGTGGTTACTTCGATGTCCGGGACAAGGACGACCGTTGGATTCGAATCTGGATTAAGCCTGGCGATCTTATCATCTTGCCGGCCGGTATCTACCATCGTTTTACTCTGGACACCAATAATTATACAAAGTTAATGAGGCTGTTCCAAGGAGAGCCAATTTGGACCCCGTTTAACAGACCACAAGAGCAGCATCCAGCAAGGAAAGAGTACCTCAAGACCTTCACTGAGAAAGCTGGAGTGGCACTCGAGGCTCATTAA 1596 45.8 MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGASALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPLAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAAGPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNPELSSSSLEGYMNHQMRTHISNKNLGQFATSSLSPTGVTKAFVGTADNQPKLACFPVDLNVKGLHEPVIFWRSCMGEAWFMDDSSEDQRLPHHRNPKEFVSMDQLAELGVLHWKLNPKVYENDEELKKIRDDRGYNYVDLLDICPEKLANYEANLKDFFTEHIHANEEIRYCLDGSGYFDVRDKDDRWIRIWIKPGDLIILPAGIYHRFTLDTNNYTKLMRLFQGEPIWTPFNRPQEQHPARKEYLKTFTEKAGVALEAH 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1073070 1079421 - CmaCh17G002070.1 Cma17g00207 312102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00207 531 MobiDBLite consensus disorder prediction 221 279 - -
Cma17g00207 531 MobiDBLite consensus disorder prediction 222 236 - -
Cma17g00207 531 Pfam Jas motif 246 270 IPR018467 -
Cma17g00207 531 SUPERFAMILY RmlC-like cupins 346 520 IPR011051 -
Cma17g00207 531 MobiDBLite consensus disorder prediction 109 138 - -
Cma17g00207 531 CDD cupin_ARD 374 502 IPR004313 GO:0010309
Cma17g00207 531 MobiDBLite consensus disorder prediction 183 207 - -
Cma17g00207 531 PANTHER ACIREDUCTONE DIOXYGENASE 331 524 IPR004313 GO:0010309
Cma17g00207 531 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 347 515 IPR027496 GO:0016491|GO:0019509
Cma17g00207 531 Pfam tify domain 144 172 IPR010399 -
Cma17g00207 531 Pfam ARD/ARD' family 349 502 IPR004313 GO:0010309
Cma17g00207 531 Gene3D Jelly Rolls 342 523 IPR014710 -
Cma17g00207 531 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cma17g00207 531 MobiDBLite consensus disorder prediction 123 138 - -
Cma17g00207 531 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 331 524 - -
Cma17g00207 531 SMART tify_2 138 173 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00207 - - - bhj:120092625 607.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01745 Cma17g00207 CCT
Cma06g01371 Cma17g00207 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00207 Cma-Chr17:1073070 Cma17g00674 Cma-Chr17:5642025 7.28E-08 dispersed
Cma08g01125 Cma-Chr8:6956617 Cma17g00207 Cma-Chr17:1073070 0 transposed
Cma14g01745 Cma-Chr14:12761925 Cma17g00207 Cma-Chr17:1073070 1.01E-86 wgd
Cma17g00207 Cma-Chr17:1073070 Cma06g01371 Cma-Chr6:8954752 2.02E-88 wgd
Cma17g00207 Cma-Chr17:1073070 Cma08g01124 Cma-Chr8:6953686 4.63E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g556 . . . . . . Bma04g00762 . . Cmo17g00199 Cma06g01371 Cma14g01745 . Car14g01573 . Cpe08g00283 Cpe03g01463 . . . . . . . Cla06g00613 Cam06g0651 Cec06g0654 Cco06g0657 Clacu06g0638 Cmu06g0632 Cre06g1399 . . Cone7ag0278 Cone4ag0270 Lsi05g01636 . . . . . Bda11g00597 . . Bpe13g00587 . . Sed09g0733 Cmo06g01384 Cmo14g01782 . Cma17g00207 . Car17g00182 Cpe12g00175 . Bhi12g02240 Tan06g2482 Cmetu05g0857 . . . Lcy13g0312 . . . . . . . . . Chy06g00546 Cme05g00490
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36634 PF03079 ARD 2.20E-56 CL0029 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00207 Cma_Chr17 FPKM 17.903315 19.22798 24.631935 25.043877 14.492279 16.397799 13.71034 25.468596 25.334421 24.560266