Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00207 | ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAAACTGCAAAATCTACTCCTGAGGATCCACTAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTGGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAACTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGCCTTCACGAACCAGTCATATTTTGGAGATCTTGCATGGGAGAGGCTTGGTTTATGGATGATAGCAGTGAAGACCAGAGGCTTCCTCATCACCGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTGGCAGAATTAGGAGTGTTGCACTGGAAATTGAACCCTAAGGTATATGAAAACGACGAGGAATTGAAGAAAATCAGAGATGACAGGGGATACAATTACGTGGATTTACTTGATATATGTCCAGAGAAACTTGCCAATTATGAAGCGAACTTGAAGGATTTCTTCACAGAGCACATTCACGCCAATGAGGAAATTCGCTACTGCTTGGATGGAAGTGGTTACTTCGATGTCCGGGACAAGGACGACCGTTGGATTCGAATCTGGATTAAGCCTGGCGATCTTATCATCTTGCCGGCCGGTATCTACCATCGTTTTACTCTGGACACCAATAATTATACAAAGTTAATGAGGCTGTTCCAAGGAGAGCCAATTTGGACCCCGTTTAACAGACCACAAGAGCAGCATCCAGCAAGGAAAGAGTACCTCAAGACCTTCACTGAGAAAGCTGGAGTGGCACTCGAGGCTCATTAA | 1596 | 45.8 | MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGASALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPLAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAAGPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNPELSSSSLEGYMNHQMRTHISNKNLGQFATSSLSPTGVTKAFVGTADNQPKLACFPVDLNVKGLHEPVIFWRSCMGEAWFMDDSSEDQRLPHHRNPKEFVSMDQLAELGVLHWKLNPKVYENDEELKKIRDDRGYNYVDLLDICPEKLANYEANLKDFFTEHIHANEEIRYCLDGSGYFDVRDKDDRWIRIWIKPGDLIILPAGIYHRFTLDTNNYTKLMRLFQGEPIWTPFNRPQEQHPARKEYLKTFTEKAGVALEAH | 531 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 1073070 | 1079421 | - | CmaCh17G002070.1 | Cma17g00207 | 312102 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00207 | 531 | MobiDBLite | consensus disorder prediction | 221 | 279 | - | - | |
Cma17g00207 | 531 | MobiDBLite | consensus disorder prediction | 222 | 236 | - | - | |
Cma17g00207 | 531 | Pfam | Jas motif | 246 | 270 | IPR018467 | - | |
Cma17g00207 | 531 | SUPERFAMILY | RmlC-like cupins | 346 | 520 | IPR011051 | - | |
Cma17g00207 | 531 | MobiDBLite | consensus disorder prediction | 109 | 138 | - | - | |
Cma17g00207 | 531 | CDD | cupin_ARD | 374 | 502 | IPR004313 | GO:0010309 | |
Cma17g00207 | 531 | MobiDBLite | consensus disorder prediction | 183 | 207 | - | - | |
Cma17g00207 | 531 | PANTHER | ACIREDUCTONE DIOXYGENASE | 331 | 524 | IPR004313 | GO:0010309 | |
Cma17g00207 | 531 | Hamap | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. | 347 | 515 | IPR027496 | GO:0016491|GO:0019509 | |
Cma17g00207 | 531 | Pfam | tify domain | 144 | 172 | IPR010399 | - | |
Cma17g00207 | 531 | Pfam | ARD/ARD' family | 349 | 502 | IPR004313 | GO:0010309 | |
Cma17g00207 | 531 | Gene3D | Jelly Rolls | 342 | 523 | IPR014710 | - | |
Cma17g00207 | 531 | ProSiteProfiles | Tify domain profile. | 138 | 173 | IPR010399 | - | |
Cma17g00207 | 531 | MobiDBLite | consensus disorder prediction | 123 | 138 | - | - | |
Cma17g00207 | 531 | PANTHER | 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE | 331 | 524 | - | - | |
Cma17g00207 | 531 | SMART | tify_2 | 138 | 173 | IPR010399 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma14g01745 | Cma17g00207 | CCT | |
Cma06g01371 | Cma17g00207 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma17g00207 | Cma-Chr17:1073070 | Cma17g00674 | Cma-Chr17:5642025 | 7.28E-08 | dispersed | |
Cma08g01125 | Cma-Chr8:6956617 | Cma17g00207 | Cma-Chr17:1073070 | 0 | transposed | |
Cma14g01745 | Cma-Chr14:12761925 | Cma17g00207 | Cma-Chr17:1073070 | 1.01E-86 | wgd | |
Cma17g00207 | Cma-Chr17:1073070 | Cma06g01371 | Cma-Chr6:8954752 | 2.02E-88 | wgd | |
Cma17g00207 | Cma-Chr17:1073070 | Cma08g01124 | Cma-Chr8:6953686 | 4.63E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36634 | PF03079 | ARD | 2.20E-56 | CL0029 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00207 | - | - | bhj:120092625 | 607.06 |