Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00239 ATGTCAAAATTTAGCCACTTCAAACTCATTCTCTTCTTCCTACCGCTCCTAATTTCCCTCCTGTCCACAGCCGCCGCCCCGGCCGGCCGCCGTCACCCTCTGGACCCACTCTCACCGGACGAAATCGAACTCATACGATCACTTGTCATCAACTCTATTCGCAACCTCTCCACCACCAACGTCACGTTCCAATACGTCGCCCCCGCCGATCCCAACAAGCAATCTGTACTCTTATGGCACTCAAACCCCAAAACCCCGTCGCCACCTCGACGCGCCACCGCCATCGTCCGTTACAACAGTTCCACACACGAGATCCTCATAGACCTGGACAAAAAAGCTATAATCTCGGACCGGGTCTACTCCGGTCCAGCTTACTCTGTGTTCACATTGAGTGAGCTGTTAGACGCCGTCGCTCTTCCGCAGTCCCACCCACCGTTCGTGGCGGCGATGAAAAAGAGAAAGCTGAAAGTGAAAGATGTAATTTGCGCGTGTTATAGCGTTGGGTGGTTTGGGGAAAAAATGAAGCAAAGGAGGATGGTAAAGCTTCAATGTTATTATTCGAATGGGAGTGTCAATTTGTACATGAGGCCGGTGGAAGGCGTGACCATGACCGTCAATCTCGATGAGATGAAAATTATTGGGTTTCGAGATCGATACGAGGCTCCGGTGCCGAAGGCCGATGGAACTGAATACAGACCATCTATGCTCAAGCCGCCATTTTTGCCACCTTTGAACGGAGTTAAGATGGTGCAGCCGGAAGGACCCAGCTTCAAAGTCAACGGTCACTCAATTAGTTGGTCAAACTGGGAATTACACGTAGGATTCGACAAGAGAGCAGGGTCAATCATATCGCTAGCATCAATCTACGACATCGAAAAGCAAAAGCGCCGACAAGTACTGTACAAAGGTTTCATATCGGAGCTGTTTGTACCCTACATGGATTTAACCGAAGAATGGTACTACCGAACATTTTTCGATGCCGGCGAGTACGGCTTGGGGCAGTATGCAGCGTCATTAGAGCCGCTCAGAGACTGCCCAGAAAATGCAGTGTTTATGGACACGTACATAGCTGCCGGAGATGGGAGGCCGATGAAGATGGCCAACACTTTCTGTATATTCGAACGCCACGCCGGTGATATCATGTGGCGTCACACCGAGCGCGCCATTTCAAATAGAATTATTAGAGAGACGAGGGCGGAAGTGAGCTTGGTGGTGAGGATGGTGGCTACCGTGGCTAATTATGACTATGTTTTGGACTGGGAATTTAAGCAGAGCGGCTCCATTATTGCTACTGTGGGGTTGACGGGTTTGCTGGCAGTGAAGGCATCAAAGTACACTCACAGAGACCAGATAAAGGAGGAAGTGTACGGCACGTTGATATCCGAGAATACGATTGGCGCCAACCATGACCACTTCTTCACCTACTATCTCGATCTCGACGTCGACGGCGGCTCCAACTCGTTCGTTAAATCCAACCTGCGCACTGTCCGACCACCGAATACCGATAATCCTAGGAAGAGCTATTGGACGGTGGTCTCCGAGACGGCGAAAACAGAGGCGGATGCGAGGATCAAATTTGGGCGTCAAGAGGCGGAGCTGGTGGTTGTTAATCCTAATCGGAGGACCAGAATGGGGAATCCCGTCGGGTACCGTTTGATTCCGAAGTCGACGGCGGGTCCCCTTCTGAGTGTTGACGATTACCCCCAAATTAGGGCAGCGTTCACGAATTACAATGTGTGGGTTACACCGTATAATATCTCTGAGAAATGGGCCTCTGGACTCTACACAGATCAGAGCCGTGGAAATGATACCTTGGCTACTTGGAGTCTCAGGAACAGGGAGATAGAGAATAAGGACATAGTGATGTGGTACACTCTAGGAGTTCATCATGCACCTTGCCAAGAAGATTTCCCATTAATGCCAACGCTTAGCAGTGGGTTTGAGCTGAGACCGACCAATTTCTTCGAGAGCAATCCTGTGCTTAAAGTCACCCCTCCCCGCCCGCTCAACCGCTCCGTTTGCGCTCACTGA 2031 50.71 MSKFSHFKLILFFLPLLISLLSTAAAPAGRRHPLDPLSPDEIELIRSLVINSIRNLSTTNVTFQYVAPADPNKQSVLLWHSNPKTPSPPRRATAIVRYNSSTHEILIDLDKKAIISDRVYSGPAYSVFTLSELLDAVALPQSHPPFVAAMKKRKLKVKDVICACYSVGWFGEKMKQRRMVKLQCYYSNGSVNLYMRPVEGVTMTVNLDEMKIIGFRDRYEAPVPKADGTEYRPSMLKPPFLPPLNGVKMVQPEGPSFKVNGHSISWSNWELHVGFDKRAGSIISLASIYDIEKQKRRQVLYKGFISELFVPYMDLTEEWYYRTFFDAGEYGLGQYAASLEPLRDCPENAVFMDTYIAAGDGRPMKMANTFCIFERHAGDIMWRHTERAISNRIIRETRAEVSLVVRMVATVANYDYVLDWEFKQSGSIIATVGLTGLLAVKASKYTHRDQIKEEVYGTLISENTIGANHDHFFTYYLDLDVDGGSNSFVKSNLRTVRPPNTDNPRKSYWTVVSETAKTEADARIKFGRQEAELVVVNPNRRTRMGNPVGYRLIPKSTAGPLLSVDDYPQIRAAFTNYNVWVTPYNISEKWASGLYTDQSRGNDTLATWSLRNREIENKDIVMWYTLGVHHAPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPRPLNRSVCAH 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1218191 1221879 + CmaCh17G002390.1 Cma17g00239 312134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00239 676 Pfam Copper amine oxidase, N3 domain 128 219 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 SUPERFAMILY Amine oxidase catalytic domain 235 666 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 ProSitePatterns Copper amine oxidase topaquinone signature. 403 416 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 Gene3D - 127 220 - -
Cma17g00239 676 Gene3D Copper amine oxidase, catalytic domain 257 671 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 SUPERFAMILY Amine oxidase N-terminal region 125 232 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 Gene3D - 30 126 - -
Cma17g00239 676 SUPERFAMILY Amine oxidase N-terminal region 31 122 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 Pfam Copper amine oxidase, enzyme domain 248 661 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 PANTHER AMINE OXIDASE 16 668 - -
Cma17g00239 676 Pfam Copper amine oxidase, N2 domain 32 119 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 PANTHER COPPER AMINE OXIDASE 16 668 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01145 Cma17g00239 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00100 Cma-Chr10:406293 Cma17g00239 Cma-Chr17:1218191 1.94E-86 dispersed
Cma11g00072 Cma-Chr11:355752 Cma17g00239 Cma-Chr17:1218191 2.28E-87 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma17g00241 Cma-Chr17:1226862 0 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma17g00240 Cma-Chr17:1222505 0 tandem
Cma02g01501 Cma-Chr2:8575801 Cma17g00239 Cma-Chr17:1218191 0 transposed
Cma17g00239 Cma-Chr17:1218191 Cma08g01145 Cma-Chr8:7059926 4.35E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00239 K00276 - csv:101210998 1062.75